Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00863 ATGTTCGTTTCTTATGAATTCGACATTGTATTATTCTGTGGTTCATACACGCAGGTCGAAGATAATGGATCTGAAGAAAAAACAGATACAGATAAGAACATGGGTATCATGTTTGGAATTTTGAGGAGGAACAAAACCGTTAAACTTGAACATTTGATATTGAATAGAAAGTCTTTTGCTCAGACAGTAGAGAATTTATTTGCTCTATCCTTTCTGGTTAAGGATGGTCGGGCTGCGATAACTATTGATAAAAATGGTTCTCATTTCGTGTCACCGAAGAACGCCCCTGCCCATAGCGCCATTATGTCACATGAAGTTAATTACAGTCATTTTGTATTCAGATTCGATTTCAAGGATTGGAAGCCGATGGTGGATATGGTACCAGTTGGAGATGAGCTGATGCCACACAGGAACATACTGAACTCAGCGCAGGTACCTCAAGCAGAAGCATCGACGGACAATTCTGAAGCAGCAGCATTACCTACTACACCAATCCGAAAGCTGTCGCGAAATCGAGGTTTAGTTATGCAATCTGTTGTTGAAGATTCTCCTGATAATGGCGCTCATTCACGAGCAACTTCAATCTTGAGGTGTAAGAGAAAGCTTAATCAAGGTATGGTTAACTAG 627 40.51 MFVSYEFDIVLFCGSYTQVEDNGSEEKTDTDKNMGIMFGILRRNKTVKLEHLILNRKSFAQTVENLFALSFLVKDGRAAITIDKNGSHFVSPKNAPAHSAIMSHEVNYSHFVFRFDFKDWKPMVDMVPVGDELMPHRNILNSAQVPQAEASTDNSEAAALPTTPIRKLSRNRGLVMQSVVEDSPDNGAHSRATSILRCKRKLNQGMVN 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5141329 5142650 + Carg16961-RA Car10g00863 155765

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00863 208 Pfam Nse4 C-terminal 47 133 IPR014854 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00863 K22825 NSMCE4, NSE4; non-structural maintenance of chromosomes element 4 - csv:101220149 338.576
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00863 Car-Chr10:5141329 Car11g00707 Car-Chr11:4039518 5.65E-119 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g00707 . 55 402 Non-SMC Element family AT1G51130 57.6 1.1e-104 377.5
Car10g00863 . 18 202 Non-SMC Element family AT1G51130 60.1 3.6e-52 203.0
Car11g00707 . 52 382 Non-SMC Element family AT3G20760 53.0 2.1e-89 326.6
Car10g00863 . 18 183 Non-SMC Element family AT3G20760 55.4 1.4e-42 171.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008652 0 2 0 0 1 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00863 Car_Chr10 FPKM 11.542753 14.350631 19.97258 19.705856 21.51037 22.770714 22.368835 19.987797 19.787104 22.397057