Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00876 ATGTTCGGGATGACAGCGGAGGCGACGACCGTGACAACAGTGGCGGTGATAGTCACGATGGCGGGGTGGTTGCTCGGTGGAGTTGAGGGTAGAGAACCAGTGTTGCATAGAGTTGGAGGAGGAAAATACACTTGGACAACTAATGTTAACTTCACTGATTGGTCAATTCACGAGCACTTTTACGTTGGTGATTGGCTCTATTTCGGGTTCGATAAACGTATCTACAACGTGCTACAAGTGAACAAAACGAGCTACGACAGTTGCAACGAGAATGATTTCGTTTTCAACGTTACGAGAGGGGGACGAGACGTGTTCAATCTAACACAAGCAAAGCCATACTACTTTCTAAGTGGAAGAGGGTTTTGTTTTCAAGGAATGAAGGTTGCTATCTTTGTTGAAGACTCGCCTCCCATTTCATCACCCAAAGTTTCAAACCATTCTTCATCTATTCAACCATTAAAGCCTCTCTCATCCCTCTCGGTATTGATCACGCTTGCCTTCGCTAAAATCGTTCTTCTAAATTAG 525 44.76 MFGMTAEATTVTTVAVIVTMAGWLLGGVEGREPVLHRVGGGKYTWTTNVNFTDWSIHEHFYVGDWLYFGFDKRIYNVLQVNKTSYDSCNENDFVFNVTRGGRDVFNLTQAKPYYFLSGRGFCFQGMKVAIFVEDSPPISSPKVSNHSSSIQPLKPLSSLSVLITLAFAKIVLLN 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5243593 5244229 - Carg16974-RA Car10g00876 155778

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00876 174 ProSiteProfiles Phytocyanin domain profile. 34 134 IPR003245 GO:0009055
Car10g00876 174 Pfam Plastocyanin-like domain 45 126 IPR003245 GO:0009055
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00876 - - - cmos:111461613 346.665
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00876 Car-Chr10:5243593 Car11g00977 Car-Chr11:6521317 6.49E-46 dispersed
Car10g00876 Car-Chr10:5243593 Car19g00030 Car-Chr19:214048 1.55E-12 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car18g00022 . 12 146 Phytocyanin Superfamily AT1G48940 55.5 1.7e-38 156.4
Car11g00976 CST 24 126 Phytocyanin Superfamily AT3G01070 67.3 2.1e-38 156.0
Car05g00293 CCT 7 171 Phytocyanin Superfamily AT2G25060 53.3 1.5e-42 169.9
Car14g00512 . 18 177 Phytocyanin Superfamily AT5G15350 50.3 1.7e-43 172.9
Car11g00976 CST 28 140 Phytocyanin Superfamily AT5G15350 60.2 6.1e-41 164.5
Car05g00293 CCT 16 171 Phytocyanin Superfamily AT4G31840 54.5 1.2e-44 176.8
Car17g00723 . 21 134 Phytocyanin Superfamily AT1G79800 57.0 1.3e-36 150.2
Car18g00022 . 12 146 Phytocyanin Superfamily AT1G48940 55.5 1.7e-38 156.4
Car17g00723 . 21 134 Phytocyanin Superfamily AT1G79800 57.0 1.3e-36 150.2
Car05g00293 CCT 9 170 Phytocyanin Superfamily AT5G25090 50.9 1.1e-38 157.1
Car05g00293 CCT 7 171 Phytocyanin Superfamily AT2G25060 53.3 1.5e-42 169.9
Car05g00293 CCT 16 171 Phytocyanin Superfamily AT4G31840 54.5 1.2e-44 176.8
Car11g00976 CST 24 126 Phytocyanin Superfamily AT3G01070 67.3 2.1e-38 156.0
Car14g00512 . 18 177 Phytocyanin Superfamily AT5G15350 50.3 1.7e-43 172.9
Car11g00976 CST 28 140 Phytocyanin Superfamily AT5G15350 60.2 6.1e-41 164.5
Car20g00109 . 19 229 Phytocyanin Superfamily AT1G08500 59.0 7.5e-63 237.7
Car10g00876 . 32 173 Phytocyanin Superfamily AT2G27035 54.2 4.0e-42 168.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003401 0 1 0 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 2 2 1 2 1 1 1 2 2 3 3 1 49
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00876 Car_Chr10 FPKM 1.207317 1.035661 0.0 0.0 0.0 0.556116 0.0 0.0 0.0 0.0