Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00877 ATGATGATGATGTTCAATGAGATGGGATTTTGTGACGATATGGATTTCCTTTCGGCTCCGATTGTGGATGGAGATGTCGTAGCTCGACCAGCTGATCCTGAAGTTGTGGTGGAAGATGATTATTCTGATGAAGAGATCGATGTCGATGAGCTTGAGAGGAGGATGTGGAGGGACAAGATGCGTCTCAAACGTCTTAAAGAGCAAAGTAAGGTTAAGGAAGGGATCGATATCGCGAAGCAGCGACAGTCTCAAGACCAGGCTAGGAGGAAGAAGATGTCAAGGGCTCATGATGGGATCTTGAAATACATGTTGAAGATTATGGAAGTTTGTAATGCTCAAGGCTTTGTATATGGAATAATTCCAGAGAAGGGAAAGCCAGTAACCGGGGCATCGGATAATCTGCGTGAATGGTGGAAAGACAAGGTTAGATTTGATAGAAACGGACCGGCTGCCATAGCTAAGTACCAGGCAGACAATGCGATTCCCGGACGAAACGATGGGTGCAATTCGATCGGTCCAACCCCGCATACCTTGCAGGAACTTCAGGATACGACCCTTGGATCTCTCTTATCAGCTTTGATGCAGCACTGTGACCCTCCTCAAAGAAGATTTCCATTGGAGAAAGGCGTTCCTCCACCGTGGTGGCCTACTGGAGTCGAGGAATGGTGGCCTCAGCTCGGGTTGTCGAAGGACCAAGGTCCTCCACCTTACAAGAAGCCCCACGACTTGAAAAAAGCGTGGAAAGTTGGTGTTTTGACTGCTGTCATCAAGCATATGTCCCCTGATATCGCCAAGATCCGAAAACTTGTTAGACAGTCGAAGTGTTTGCAGGACAAGATGACTGCCAAGGAGAGTGCTACATGGCTTGCTATTATCAACCAGGAGGAGGTCTTGGCTCGGGAGCTTTATCCCAATTCTTGCCCGCCTTTGTCTTCCGGTGGGGGTAGTGGATCGTTGGTCATTAACGATTGCAGCGAGTACGATGTAGAAGGCGCTGAGGAGGAACCGAGCTTTGATGTTCAAGATCGTAAACCTGATAACCATAGCTCATTCAACTTGGGAATGGAGAGAACGAGAGAACGGGTGCCCCTTCGACAACCACCGTATGCAATCAAAGGAGAGGTTTCTACAAACTTAGATTTTATGCGAAAGAGGAAACCAACCAGCGATCTGAACATGATGATGGATCAGAAGATCTATACTTGTGAGTTCCTCCAGTGTCCTTATAGCGAGCTTCGTCTCGGGTTCAACGACAGGACGTCTAGAGACAATCATCAGTTGTCCTGTCCATATAGAACTTCTTCAGAATTCAATGGCTCAAGTTTTCATGTCAATGAGGTTAAACCAGTTATCTTCCCTCAGTCATTCGCCCCGCCCAAGTCAGCTCCACCCCCAGTTAGCTCGGTTCCATCGTCCTTCGACCTGTCCACTTTAGGCGTTCCAGAAGACGACCAAAAGATGATCAGGGAGCTCATGTCGATCTACGACACCAACATCCAAGGAAACAAAAGCAACGTAAACACCGGTAACAGCGCTATCACAGAGAACCAAAATCTTCCTCAGTTAAAGATCCAACCTCAACAAGACGAATACTTTCGCAATCAAGGTATACTGATGGACGGAAACTTCTTCGAGGGATCGAACGTTTCTAGCAGCCAATTCAACCAGTTTAAGCCAATGAATTCACCTTTCGAAAACAACCACCACGAGCACAACAATAACAACAACAACAACAACAACTTCCACATGATGTTTGGTTCTCCATTCGATTTGTCGACCTTCGACTACAAAGAAGAAGTACCCGGTGCAGCAGCCATCGATACACTGTCGAAACAGCAGGATATTCCATTATGGTATCATTGA 1863 46.86 MMMMFNEMGFCDDMDFLSAPIVDGDVVARPADPEVVVEDDYSDEEIDVDELERRMWRDKMRLKRLKEQSKVKEGIDIAKQRQSQDQARRKKMSRAHDGILKYMLKIMEVCNAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAIAKYQADNAIPGRNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGVPPPWWPTGVEEWWPQLGLSKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEEVLARELYPNSCPPLSSGGGSGSLVINDCSEYDVEGAEEEPSFDVQDRKPDNHSSFNLGMERTRERVPLRQPPYAIKGEVSTNLDFMRKRKPTSDLNMMMDQKIYTCEFLQCPYSELRLGFNDRTSRDNHQLSCPYRTSSEFNGSSFHVNEVKPVIFPQSFAPPKSAPPPVSSVPSSFDLSTLGVPEDDQKMIRELMSIYDTNIQGNKSNVNTGNSAITENQNLPQLKIQPQQDEYFRNQGILMDGNFFEGSNVSSSQFNQFKPMNSPFENNHHEHNNNNNNNNNFHMMFGSPFDLSTFDYKEEVPGAAAIDTLSKQQDIPLWYH 620
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5251306 5253168 + Carg16975-RA Car10g00877 155779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00877 620 Pfam Ethylene insensitive 3 49 296 IPR006957 GO:0005634
Car10g00877 620 Coils Coil 48 68 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g00754 Car-Chr4:4366440 Car10g00877 Car-Chr10:5251306 6.08E-111 dispersed
Car04g02399 Car-Chr4:19172289 Car10g00877 Car-Chr10:5251306 0 dispersed
Car10g00877 Car-Chr10:5251306 Car15g00509 Car-Chr15:2772226 0 dispersed
Car10g00877 Car-Chr10:5251306 Car11g00689 Car-Chr11:3864985 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4204 PF04873 EIN3 3.80E-129 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00877 K14514 - csv:101206055 1103.2