Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00881 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGGAAAAACCAGTGGGCTCGAATCTCTTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGTAAGGCTCGCTGGTATGAGTGGCTTGACCCTTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGCCTTGAGCGCTATGAGAAACTTCTTGATGCTGCTTGTGTTAAGGACGAGAATTACGAACCAGGAGATGACCCACGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCAGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAACACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGGGAGAAACAACTTGAAGAGGCTAGGAGGCTTGCTTCGCTTCAAAAAAGGAGGGAGCTAAAAGCTGCTGGGATTGATACTCGACATCGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTCGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGGGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAGCAACAATTGAAGAGCTTGAAGGCAAAAGAAGGATTGATGTAGAAGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTTCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCTGGTGATCTTCTTGCTGGTAATGAAGAGCTTGCTGAAGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCCCAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAGAGGACGCCGGCTGGGAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCGATGCTCACACCCTCAGCAACTCCTGGTGGTGTTGGTCTTACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGTATGACTCCAAAAGGAACACCTATTAGAGATGAGTTACATATCAATGAAGATATGGATGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGGAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCAGAGGAGATGATTGAAGAGGATATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTCGGAAAAGATCTAAAGTGCTACAGAGGGAGCTTCCTCGGCCTCCTACTGCTTCCTTGGAACTTATTAGAAATTCCTTGATCGTTGATGGAGACAAGAGTTCATTTGTACCACCTACCCCTATTGAGAAGGCTGATGAAATGGTAAGAAAGGAACTTCTTGCTTTGCTAGAGCATGATAATGCGAAGTACCCGATTGATGAAAAGGTCAACAAGGAGAAGAAGAAAGGTTCCAAGCGCTCTGGAAATAGACCTACTGCAGCCATCCCCACAATAGATGATTTTGAAGTAACTGAGATGGAAGAGGCTGATTATTTGATAAATGAAGAGGCCCGGTATTTGTGTGTTGCAATGGGGCATGAAAAGGAATCCTTAGATGAGTTTGTGGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCCAGTGTTGCTGGAAACCACGAGAAACTAGCCGCCTTGCAGGATGAGTTTGAGTATGTTAAAATGAAAATGGATGACGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCACAAATTGAGGCAACGTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGAGGCTCTTCAAAATCAAGAGATGTCAGCTGCTTCGCACAGGATTAGTGGTCTCTCAGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTATGGTAATCTTTTGGCGGACTTGGAAAAGATCCAGAAAATCATGGATGATCGCAAGGCACTGGCACAAAAGGAGGAAGAAATCGCAGCTGAGAGTCGCACTCTTCAGTTGGCGGAGGCTGAGGCTAATCAATCGGTTGGAGAAAAAGCTGATAATAGTTATGAATCCATGTCTGCATCAGCAGCAGTCAATTGTGAAAACTCTATGCCCGTTACCTCAGCCCCCAATGAATTAACGGGCGAGCAACTGAACTTGTCCGTGAGACATGAACATGGCACATCTAATGCCATGGATATCGACGCAGAGAAAGAAAGTGCAGCGGTGAGCTCAGATATTGGCTTAACTGATGACAAACTACCTTCTGCAGTGGAAGAGAATGCATCACTGCCTGACAATGGCTTTGAAGTTTCTGATAAAAGTCGAACCATTGATGCTCCTTCTCAAGAACTCTTGGGCCCTCATGCAAATGGCTCTCCAGACTCCATTACCGTGGAAAATAAGATCAGCAATGATTCAGTTGATCGAGAAGCTATTCAAAATGTTGAGTGTAGTACCAATAATGTGGAGGAAGTCGAAGATGTTGAAACTCAGCAGCTTAACACTGAAGCTGAAAACTCAGAGTTTCATTTGACTAATCTCGATTCTTCTGCTGCACCTGCATCTTCTAATGAGGATGGCCCTCGTAACGAAGGGGAAGCAACGGAATAG 3078 44.8 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRHRKRKRKGIDYNAEIPFEKRPPPGFFDVSGEDRPVEQPKFPATIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYAGDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELHINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLIVDGDKSSFVPPTPIEKADEMVRKELLALLEHDNAKYPIDEKVNKEKKKGSKRSGNRPTAAIPTIDDFEVTEMEEADYLINEEARYLCVAMGHEKESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKMKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFEALQNQEMSAASHRISGLSEEVQKQKELERTLQLRYGNLLADLEKIQKIMDDRKALAQKEEEIAAESRTLQLAEAEANQSVGEKADNSYESMSASAAVNCENSMPVTSAPNELTGEQLNLSVRHEHGTSNAMDIDAEKESAAVSSDIGLTDDKLPSAVEENASLPDNGFEVSDKSRTIDAPSQELLGPHANGSPDSITVENKISNDSVDREAIQNVECSTNNVEEVEDVETQQLNTEAENSEFHLTNLDSSAAPASSNEDGPRNEGEATE 1025
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5348876 5361475 - Carg28170-RA Car10g00881 155783

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00881 1025 MobiDBLite consensus disorder prediction 914 963 - -
Car10g00881 1025 MobiDBLite consensus disorder prediction 157 176 - -
Car10g00881 1025 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Car10g00881 1025 MobiDBLite consensus disorder prediction 598 618 - -
Car10g00881 1025 MobiDBLite consensus disorder prediction 988 1013 - -
Car10g00881 1025 Pfam pre-mRNA splicing factor component 407 657 IPR021786 -
Car10g00881 1025 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Car10g00881 1025 MobiDBLite consensus disorder prediction 382 421 - -
Car10g00881 1025 MobiDBLite consensus disorder prediction 988 1025 - -
Car10g00881 1025 Coils Coil 167 187 - -
Car10g00881 1025 Pfam Myb-like DNA-binding domain 10 70 - -
Car10g00881 1025 MobiDBLite consensus disorder prediction 113 150 - -
Car10g00881 1025 Coils Coil 811 831 - -
Car10g00881 1025 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Car10g00881 1025 MobiDBLite consensus disorder prediction 949 963 - -
Car10g00881 1025 MobiDBLite consensus disorder prediction 400 414 - -
Car10g00881 1025 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00881 K12860 CDC5L, CDC5, CEF1; pre-mRNA-splicing factor CDC5/CEF1 - csv:101206265 1688.32
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00881 Car-Chr10:5348876 Car05g00545 Car-Chr5:3189819 9.90E-11 dispersed
Car10g00881 Car-Chr10:5348876 Car12g00806 Car-Chr12:7753947 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car12g00806 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.6 0.0e+00 1216.1
Car10g00881 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.3 0.0e+00 1202.6
Car10g00301 CST 165 640 MYB-Related Transcription Factor Family AT3G18100 54.2 4.3e-146 515.8
Car10g00301 CST 165 640 MYB-Related Transcription Factor Family AT3G18100 54.2 4.3e-146 515.8
Car12g00806 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.6 0.0e+00 1216.1
Car10g00881 . 1 851 MYB-Related Transcription Factor Family AT1G09770 76.3 0.0e+00 1202.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003356 2 0 1 2 1 3 2 2 2 1 1 1 2 1 2 3 2 2 2 2 5 1 1 1 1 1 0 1 2 2 49
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4205 PF11831 Myb_Cef 1.10E-57 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00881 Car_Chr10 FPKM 0.050106 0.289115 0.0 0.065492 0.0 0.0 0.0 0.0 0.0 0.0