Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00881 ATGAGGATTATGATAAAAGGTGGTGTGTGGAAGAACACGGAAGATGAGATCCTTAAAGCTGCGGTTATGAAATATGGGAAAAACCAGTGGGCTCGAATCTCTTCGCTTCTTGTTCGGAAATCTGCTAAGCAGTGTAAGGCTCGCTGGTATGAGTGGCTTGACCCTTCCATTAAAAAGACTGAGTGGACAAGAGAGGAGGATGAGAAACTACTCCATCTTGCTAAGCTCATGCCAACCCAGTGGAGAACTATTGCACCAATTGTCGGGCGTACTCCATCCCAGTGCCTTGAGCGCTATGAGAAACTTCTTGATGCTGCTTGTGTTAAGGACGAGAATTACGAACCAGGAGATGACCCACGAAAATTGCGCCCTGGAGAAATTGACCCAAACCCAGAATCAAAGCCTGCACGTCCAGATCCTGTTGACATGGATGAAGATGAAAAGGAAATGCTTTCTGAAGCACGAGCAAGGTTAGCAAACACTAGGGGAAAGAAGGCAAAAAGGAAAGCCAGGGAGAAACAACTTGAAGAGGCTAGGAGGCTTGCTTCGCTTCAAAAAAGGAGGGAGCTAAAAGCTGCTGGGATTGATACTCGACATCGGAAGAGAAAGAGAAAAGGAATAGATTACAATGCTGAAATTCCTTTCGAGAAAAGGCCTCCTCCAGGATTTTTTGATGTTAGTGGGGAAGATAGACCAGTGGAACAGCCCAAATTTCCAGCAACAATTGAAGAGCTTGAAGGCAAAAGAAGGATTGATGTAGAAGCTCAATTAAGAAAGCAAGATATTGCAAAGAATAAAATTGCTCAGAGACAAGATGCTCCATCAGCTGTACTGCAAGCAAATAAGCTGAATGACCCAGAAATGGTGAGGAAAAGATCTAAACTTATGCTTCCTGCACCTCAAATTTCAGACCATGAATTGGAGGAAATTGCAAAGATGGGATATGCTGGTGATCTTCTTGCTGGTAATGAAGAGCTTGCTGAAGGAAGTGGTGCTACACGAGCTCTGCTTGCAAATTATGCCCAGACACCACGACAAGGAATGACACCTTTTCGAACTCCCCAGAGGACGCCGGCTGGGAAGGGTGATGCTATAATGATGGAGGCAGAAAACCTTGCTAGGCTGAGAGAATCTCAGACTCCATTATTGGGAGGAGAGAATCCAGAGCTGCATCCTTCAGATTTTTCAGGGGTCACCCCAAGGAAAAAGGAGATTCAAACACCAAATCCGATGCTCACACCCTCAGCAACTCCTGGTGGTGTTGGTCTTACTCCTCGAAGTGGCATGACACCAGCTAGGGATGCTTACTCGTTTGGTATGACTCCAAAAGGAACACCTATTAGAGATGAGTTACATATCAATGAAGATATGGATGCACATGATAGTGCAAAACTTGAGTCTCAAAGACAAGCTGATTTGAGGAGGAATCTTAGCCTAGGATTAGGCAATCTTCCACAGCCTAAGAATGAGTACCAGGTAGTTATGCAACCAATTCCAGAAGACAAAGAAGAACCAGAGGAGATGATTGAAGAGGATATGTCTGACAGGATTGCTAGAGAACGAGCTGAGGAAGAAGCAAGGCAGCAGGCTTTGCTTCGGAAAAGATCTAAAGTGCTACAGAGGGAGCTTCCTCGGCCTCCTACTGCTTCCTTGGAACTTATTAGAAATTCCTTGATCGTTGATGGAGACAAGAGTTCATTTGTACCACCTACCCCTATTGAGAAGGCTGATGAAATGGTAAGAAAGGAACTTCTTGCTTTGCTAGAGCATGATAATGCGAAGTACCCGATTGATGAAAAGGTCAACAAGGAGAAGAAGAAAGGTTCCAAGCGCTCTGGAAATAGACCTACTGCAGCCATCCCCACAATAGATGATTTTGAAGTAACTGAGATGGAAGAGGCTGATTATTTGATAAATGAAGAGGCCCGGTATTTGTGTGTTGCAATGGGGCATGAAAAGGAATCCTTAGATGAGTTTGTGGAAGCGCACAAAACCTGCTTGAATGATCTTATGTACTTCCCCACTAGAAATGCTTATGGACTTTCCAGTGTTGCTGGAAACCACGAGAAACTAGCCGCCTTGCAGGATGAGTTTGAGTATGTTAAAATGAAAATGGATGACGATACTGAGAAGGCTGTCCGGTTGGAGAAGAAGGTTAAAGTTCTCACACATGGCTATGAGACACGGTCAAAACAAAGCCTTTGGCCACAAATTGAGGCAACGTTCAAGCAGATAGACACTGCAGCAACAGAGCTGGAGTGCTTTGAGGCTCTTCAAAATCAAGAGATGTCAGCTGCTTCGCACAGGATTAGTGGTCTCTCAGAGGAGGTTCAGAAACAAAAAGAGCTGGAGAGAACTCTGCAGCTACGTTATGGTAATCTTTTGGCGGACTTGGAAAAGATCCAGAAAATCATGGATGATCGCAAGGCACTGGCACAAAAGGAGGAAGAAATCGCAGCTGAGAGTCGCACTCTTCAGTTGGCGGAGGCTGAGGCTAATCAATCGGTTGGAGAAAAAGCTGATAATAGTTATGAATCCATGTCTGCATCAGCAGCAGTCAATTGTGAAAACTCTATGCCCGTTACCTCAGCCCCCAATGAATTAACGGGCGAGCAACTGAACTTGTCCGTGAGACATGAACATGGCACATCTAATGCCATGGATATCGACGCAGAGAAAGAAAGTGCAGCGGTGAGCTCAGATATTGGCTTAACTGATGACAAACTACCTTCTGCAGTGGAAGAGAATGCATCACTGCCTGACAATGGCTTTGAAGTTTCTGATAAAAGTCGAACCATTGATGCTCCTTCTCAAGAACTCTTGGGCCCTCATGCAAATGGCTCTCCAGACTCCATTACCGTGGAAAATAAGATCAGCAATGATTCAGTTGATCGAGAAGCTATTCAAAATGTTGAGTGTAGTACCAATAATGTGGAGGAAGTCGAAGATGTTGAAACTCAGCAGCTTAACACTGAAGCTGAAAACTCAGAGTTTCATTTGACTAATCTCGATTCTTCTGCTGCACCTGCATCTTCTAATGAGGATGGCCCTCGTAACGAAGGGGAAGCAACGGAATAG 3078 44.8 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYEKLLDAACVKDENYEPGDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDTRHRKRKRKGIDYNAEIPFEKRPPPGFFDVSGEDRPVEQPKFPATIEELEGKRRIDVEAQLRKQDIAKNKIAQRQDAPSAVLQANKLNDPEMVRKRSKLMLPAPQISDHELEEIAKMGYAGDLLAGNEELAEGSGATRALLANYAQTPRQGMTPFRTPQRTPAGKGDAIMMEAENLARLRESQTPLLGGENPELHPSDFSGVTPRKKEIQTPNPMLTPSATPGGVGLTPRSGMTPARDAYSFGMTPKGTPIRDELHINEDMDAHDSAKLESQRQADLRRNLSLGLGNLPQPKNEYQVVMQPIPEDKEEPEEMIEEDMSDRIARERAEEEARQQALLRKRSKVLQRELPRPPTASLELIRNSLIVDGDKSSFVPPTPIEKADEMVRKELLALLEHDNAKYPIDEKVNKEKKKGSKRSGNRPTAAIPTIDDFEVTEMEEADYLINEEARYLCVAMGHEKESLDEFVEAHKTCLNDLMYFPTRNAYGLSSVAGNHEKLAALQDEFEYVKMKMDDDTEKAVRLEKKVKVLTHGYETRSKQSLWPQIEATFKQIDTAATELECFEALQNQEMSAASHRISGLSEEVQKQKELERTLQLRYGNLLADLEKIQKIMDDRKALAQKEEEIAAESRTLQLAEAEANQSVGEKADNSYESMSASAAVNCENSMPVTSAPNELTGEQLNLSVRHEHGTSNAMDIDAEKESAAVSSDIGLTDDKLPSAVEENASLPDNGFEVSDKSRTIDAPSQELLGPHANGSPDSITVENKISNDSVDREAIQNVECSTNNVEEVEDVETQQLNTEAENSEFHLTNLDSSAAPASSNEDGPRNEGEATE 1025
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 5348876 5361475 - Carg28170-RA Car10g00881 155783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00881 1025 MobiDBLite consensus disorder prediction 914 963 - -
Car10g00881 1025 MobiDBLite consensus disorder prediction 157 176 - -
Car10g00881 1025 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 58 107 IPR017930 -
Car10g00881 1025 MobiDBLite consensus disorder prediction 598 618 - -
Car10g00881 1025 MobiDBLite consensus disorder prediction 988 1013 - -
Car10g00881 1025 Pfam pre-mRNA splicing factor component 407 657 IPR021786 -
Car10g00881 1025 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 2 57 IPR017930 -
Car10g00881 1025 MobiDBLite consensus disorder prediction 382 421 - -
Car10g00881 1025 MobiDBLite consensus disorder prediction 988 1025 - -
Car10g00881 1025 Coils Coil 167 187 - -
Car10g00881 1025 Pfam Myb-like DNA-binding domain 10 70 - -
Car10g00881 1025 MobiDBLite consensus disorder prediction 113 150 - -
Car10g00881 1025 Coils Coil 811 831 - -
Car10g00881 1025 ProSiteProfiles Myb-like domain profile. 2 53 IPR001005 -
Car10g00881 1025 MobiDBLite consensus disorder prediction 949 963 - -
Car10g00881 1025 MobiDBLite consensus disorder prediction 400 414 - -
Car10g00881 1025 ProSiteProfiles Myb-like domain profile. 54 103 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00881 Car-Chr10:5348876 Car05g00545 Car-Chr5:3189819 9.90E-11 dispersed
Car10g00881 Car-Chr10:5348876 Car12g00806 Car-Chr12:7753947 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4205 PF11831 Myb_Cef 1.10E-57 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00881 K12860 - csv:101206265 1688.32