Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Car10g00923 | ATGGTTATGGAGTTCTTCTTCTCCAGTAGAGTTGAGGAGGATCCCACCGACGGCCGTCCCAGACTGCCGGAGAGTACGGCGCCGCCCATTTCTTCTAAGTTCAGTTCGACTCCGAATCCGAATCCGCCATTGTTGTCGGCCATGTCTCAGCCTCTGTTCTCCCCTTCTTCCTTCTTCACTATCCCTCCAGGGATCAGCCCCACCCAACTTCTCGATTCCCCTGTTCTTCTTACCTCCTCTAATTTTCAGGCATCACCGACCACCGGAGCAATTTCGACCGGCCACCACCAAAAGAACATGAAACAAGAACAACATAACTTAGCTGAGTTCTCATTTCCTCGTACAAATCCCACAAAATCATCATCTTCATCATCAATAATGTTTCAATCGTCTTCAATGCAGCAAAATCAGGCATGGGTATCTCAAGCCGCCTTCAATTTCCCGCCGGAGACCACCGTGAACGGCGGTTCGAAATCCGACCAGCACCCACAATCTCAACCAAAAAACAGAGCATCTGACGACGGGTATAATTGGAGGAAATACGGCCAAAAACTTGTAAAAGGAAGTGAAAATCCCAGAAGCTATTACAAATGTACACACCCTACTTGCCCTGTTAGAAAGCAAGTCGAAAAATCATTGAACGGCCAAATCACAGAAATCGTTTACAAAAGTAAACACAATCATCCAAAACCAGAGTTCCCAAGAAGATTATCATCGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGGCTATCACAAGCTTTACCTCAAACAATGGCGGTAGAGCCGAAGCATTCAATGGCCTCTGATTCCGTTCCGACGCCGGAGAACTCTTCAACCATGATTGGGGATGATGATTCCGATGAACTTGATGCAAAAAGATGGAAAAGCGAGAGCGAGAACGAAATTATATTGGTCGCCGGAGGTAAAACGGTGAGAGAACAGAGGGTTGTGGTTCAAACGATTAGTAGGGTTGATAAACTAGACGATGGATATTGGTGGAGAAAATATGGACAGAAAGTTGTGAAGGGAAATCCAAATCCAAGGAGCTACTACAAGTGCACGTACGCAGGCTGTGGAGTGAGAAAGCACATAGAGAGGGCGTCCCACGATTTGAAGGCCGTTATCACTACCTACGAAGGCAAGCATAACCATGAAATTCCGGCAGCCCGCGGCGGAGGTAGCAGACCAGTCTCCAATAATCACGGCAACGACAACGGTCATGCATCAAACGGCGGCAGCGGTGACATATGGCCGAGTTCCGAGGTTTCTGGTGGCGATGATGGATTCTCTAACATGCTGTGGAGGACCAAAGAAGATGCCGCCGATGAGATTTTCCGGTCGTTGTTAGACTGA | 1362 | 47.58 | MVMEFFFSSRVEEDPTDGRPRLPESTAPPISSKFSSTPNPNPPLLSAMSQPLFSPSSFFTIPPGISPTQLLDSPVLLTSSNFQASPTTGAISTGHHQKNMKQEQHNLAEFSFPRTNPTKSSSSSSIMFQSSSMQQNQAWVSQAAFNFPPETTVNGGSKSDQHPQSQPKNRASDDGYNWRKYGQKLVKGSENPRSYYKCTHPTCPVRKQVEKSLNGQITEIVYKSKHNHPKPEFPRRLSSASSSSSSSSSSSWLSQALPQTMAVEPKHSMASDSVPTPENSSTMIGDDDSDELDAKRWKSESENEIILVAGGKTVREQRVVVQTISRVDKLDDGYWWRKYGQKVVKGNPNPRSYYKCTYAGCGVRKHIERASHDLKAVITTYEGKHNHEIPAARGGGSRPVSNNHGNDNGHASNGGSGDIWPSSEVSGGDDGFSNMLWRTKEDAADEIFRSLLD | 453 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 6999038 | 7001970 | + | Carg11765-RA | Car10g00923 | 155825 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Car10g00923 | 453 | MobiDBLite | consensus disorder prediction | 147 | 172 | - | - | |
Car10g00923 | 453 | MobiDBLite | consensus disorder prediction | 385 | 424 | - | - | |
Car10g00923 | 453 | MobiDBLite | consensus disorder prediction | 147 | 177 | - | - | |
Car10g00923 | 453 | ProSiteProfiles | WRKY domain profile. | 325 | 390 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Car10g00923 | 453 | MobiDBLite | consensus disorder prediction | 222 | 296 | - | - | |
Car10g00923 | 453 | MobiDBLite | consensus disorder prediction | 1 | 48 | - | - | |
Car10g00923 | 453 | Pfam | WRKY DNA -binding domain | 173 | 229 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Car10g00923 | 453 | Pfam | WRKY DNA -binding domain | 331 | 388 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 | |
Car10g00923 | 453 | MobiDBLite | consensus disorder prediction | 399 | 420 | - | - | |
Car10g00923 | 453 | MobiDBLite | consensus disorder prediction | 28 | 48 | - | - | |
Car10g00923 | 453 | MobiDBLite | consensus disorder prediction | 236 | 258 | - | - | |
Car10g00923 | 453 | ProSiteProfiles | WRKY domain profile. | 173 | 231 | IPR003657 | GO:0003700|GO:0006355|GO:0043565 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Car10g00923 | Car-Chr10:6999038 | Car14g00022 | Car-Chr14:149155 | 3.87E-88 | dispersed | |
Car10g00923 | Car-Chr10:6999038 | Car01g00644 | Car-Chr1:3796468 | 2.87E-116 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
4208 | PF03106 | WRKY | 3.30E-23 | CL0274 | Car | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Car10g00923 | K13424 | - | tcc:18591046 | 400.979 |