Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00923 ATGGTTATGGAGTTCTTCTTCTCCAGTAGAGTTGAGGAGGATCCCACCGACGGCCGTCCCAGACTGCCGGAGAGTACGGCGCCGCCCATTTCTTCTAAGTTCAGTTCGACTCCGAATCCGAATCCGCCATTGTTGTCGGCCATGTCTCAGCCTCTGTTCTCCCCTTCTTCCTTCTTCACTATCCCTCCAGGGATCAGCCCCACCCAACTTCTCGATTCCCCTGTTCTTCTTACCTCCTCTAATTTTCAGGCATCACCGACCACCGGAGCAATTTCGACCGGCCACCACCAAAAGAACATGAAACAAGAACAACATAACTTAGCTGAGTTCTCATTTCCTCGTACAAATCCCACAAAATCATCATCTTCATCATCAATAATGTTTCAATCGTCTTCAATGCAGCAAAATCAGGCATGGGTATCTCAAGCCGCCTTCAATTTCCCGCCGGAGACCACCGTGAACGGCGGTTCGAAATCCGACCAGCACCCACAATCTCAACCAAAAAACAGAGCATCTGACGACGGGTATAATTGGAGGAAATACGGCCAAAAACTTGTAAAAGGAAGTGAAAATCCCAGAAGCTATTACAAATGTACACACCCTACTTGCCCTGTTAGAAAGCAAGTCGAAAAATCATTGAACGGCCAAATCACAGAAATCGTTTACAAAAGTAAACACAATCATCCAAAACCAGAGTTCCCAAGAAGATTATCATCGGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGGCTATCACAAGCTTTACCTCAAACAATGGCGGTAGAGCCGAAGCATTCAATGGCCTCTGATTCCGTTCCGACGCCGGAGAACTCTTCAACCATGATTGGGGATGATGATTCCGATGAACTTGATGCAAAAAGATGGAAAAGCGAGAGCGAGAACGAAATTATATTGGTCGCCGGAGGTAAAACGGTGAGAGAACAGAGGGTTGTGGTTCAAACGATTAGTAGGGTTGATAAACTAGACGATGGATATTGGTGGAGAAAATATGGACAGAAAGTTGTGAAGGGAAATCCAAATCCAAGGAGCTACTACAAGTGCACGTACGCAGGCTGTGGAGTGAGAAAGCACATAGAGAGGGCGTCCCACGATTTGAAGGCCGTTATCACTACCTACGAAGGCAAGCATAACCATGAAATTCCGGCAGCCCGCGGCGGAGGTAGCAGACCAGTCTCCAATAATCACGGCAACGACAACGGTCATGCATCAAACGGCGGCAGCGGTGACATATGGCCGAGTTCCGAGGTTTCTGGTGGCGATGATGGATTCTCTAACATGCTGTGGAGGACCAAAGAAGATGCCGCCGATGAGATTTTCCGGTCGTTGTTAGACTGA 1362 47.58 MVMEFFFSSRVEEDPTDGRPRLPESTAPPISSKFSSTPNPNPPLLSAMSQPLFSPSSFFTIPPGISPTQLLDSPVLLTSSNFQASPTTGAISTGHHQKNMKQEQHNLAEFSFPRTNPTKSSSSSSIMFQSSSMQQNQAWVSQAAFNFPPETTVNGGSKSDQHPQSQPKNRASDDGYNWRKYGQKLVKGSENPRSYYKCTHPTCPVRKQVEKSLNGQITEIVYKSKHNHPKPEFPRRLSSASSSSSSSSSSSWLSQALPQTMAVEPKHSMASDSVPTPENSSTMIGDDDSDELDAKRWKSESENEIILVAGGKTVREQRVVVQTISRVDKLDDGYWWRKYGQKVVKGNPNPRSYYKCTYAGCGVRKHIERASHDLKAVITTYEGKHNHEIPAARGGGSRPVSNNHGNDNGHASNGGSGDIWPSSEVSGGDDGFSNMLWRTKEDAADEIFRSLLD 453
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6999038 7001970 + Carg11765-RA Car10g00923 155825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00923 453 MobiDBLite consensus disorder prediction 147 172 - -
Car10g00923 453 MobiDBLite consensus disorder prediction 385 424 - -
Car10g00923 453 MobiDBLite consensus disorder prediction 147 177 - -
Car10g00923 453 ProSiteProfiles WRKY domain profile. 325 390 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car10g00923 453 MobiDBLite consensus disorder prediction 222 296 - -
Car10g00923 453 MobiDBLite consensus disorder prediction 1 48 - -
Car10g00923 453 Pfam WRKY DNA -binding domain 173 229 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car10g00923 453 Pfam WRKY DNA -binding domain 331 388 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car10g00923 453 MobiDBLite consensus disorder prediction 399 420 - -
Car10g00923 453 MobiDBLite consensus disorder prediction 28 48 - -
Car10g00923 453 MobiDBLite consensus disorder prediction 236 258 - -
Car10g00923 453 ProSiteProfiles WRKY domain profile. 173 231 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00923 Car-Chr10:6999038 Car14g00022 Car-Chr14:149155 3.87E-88 dispersed
Car10g00923 Car-Chr10:6999038 Car01g00644 Car-Chr1:3796468 2.87E-116 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4208 PF03106 WRKY 3.30E-23 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00923 K13424 - tcc:18591046 400.979