Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00936 ATGGCAATTTCTCTCCCCTTTCTCAAATCCTCTGCTCTCTCTCTCACCATTCTCTCTGTTTTCATCTTCTTCCTCCTCTTCACTCCAAATCACTCGCCGGAATCCTCGTCCAGAAGGTCCCTAATCGCCGCCGGCGACTCCAATTCCAATGCGTCTTCGATCCCATATTGTTCCTCTCGTGAATCTCACTTCGATGGCCTCGTTAACTACTTGTATTTCCATTTCTGCGTCTTCGATCGAAACCCATTTCTCTCTGTTCCGTTTCTTATTCTCATTCTTCTCTTCCACTTCTACATCCTCATCAAAACCGCTCAGGATCACTTCTCCATTGTCACTTCCAAGCTCGCTTTTCACCTCAATTTGTCCCCGAGTATGGCTGCTGTGACGCTCTTGGCTTTGGGAAATGGCGCTCCTGATGTCTTTGCATCTGTTGCTGCCGTTCGTGGTGGGCATTATCGAACTGGATTCGGTGCAATTCTCTCTGCCGGCACGTTTGTTTCGGCTTTTGTGGTTGGATTTGTGGCCATTTATGCTGCTCCGTTTTCGGTGAATCCGGCACAGTTTGTGAGGGATGTGTTGTTTTATTTGACTGCAGCGTTGTTCTTGTTCTATGTGTATCTTAGTGCAGAGATTTTCTTGTGGCAAGCTGTTGGGTTTGTTGGATTCTATCTGTTCTTTGTTGGGCTGGTGTTTTGGATGGATTTGGGGAATGGGAAGGCTAAGAGTGGGGCTGATATGGGAGTGGCTAGAGAAGCTGAGGGTGAGTTGCATCAAGACTGTGAGATGGGAGAAGGCTACAGACATGTAGATGAAGGAAAAACCAATTCTGGCTTATGGGAAGCTCTTCGAGTGATCCCGAAAGCATGGGAGGCTCCGGTCGTGTTTCTTCTGAAGCTTACCATTCCCCAACCCGCACCTTCCGAATGGAGCAGATTCTTTACCTCAGCCAATATTTCTCTGTGTCCCATTGCTCTTCTGTATGCCTGTAACTCATTCATGTCTTTTAACCATCCCATTGCTTTCCTCTTACCGAATACGCATTTACCTCTTTGGTTCGTAGTACTCTTAGCAAGCTCCTCTCTTGCAATTCTGCACTTCATCACCGAAACCGAGCCCCCGAAAACTGAGAAAGTCCCTGTTGTGCTTGCAGCATTTGTTATGAGTGTATTTTGGATTTCGACCACCGCAGGTGAACTTCTGAACTGTCTTGCAGCTCTTGGAGTGCTTCTCAAACTCCCAGCAGCTCTACTTGGGCTTACTGTGCTTGCCTGGGGAAACTCAGTTGGGGATCTTGTTGCTGATGTTGCTCTTGCAAAAGCAGGCCAGCCCTTGCTGGCTATGGCTGGATGCTTTGCAGGACCGATGTTTAACATGCTTGTCGGGCTCGGAACGGCATTGGTTATACAAACAGCTAACAATTATCCAGAGGCCTATCAGCTTCAATTCCATATCGGAATCGTGATTGCGTTCGTGTTCCTACTTTTCAGCCTGATGGGTTCCTTGCTTGTAGTTATTTGGTGCAGATTTCGGGTGCCTCGGTTTTGGGGATTCTGCCTTGTTGTGCTCTACATTGTTTTCATGGCTACCAGTTTACTGATGGCTGAGTATTCTCCATGA 1617 47.5 MAISLPFLKSSALSLTILSVFIFFLLFTPNHSPESSSRRSLIAAGDSNSNASSIPYCSSRESHFDGLVNYLYFHFCVFDRNPFLSVPFLILILLFHFYILIKTAQDHFSIVTSKLAFHLNLSPSMAAVTLLALGNGAPDVFASVAAVRGGHYRTGFGAILSAGTFVSAFVVGFVAIYAAPFSVNPAQFVRDVLFYLTAALFLFYVYLSAEIFLWQAVGFVGFYLFFVGLVFWMDLGNGKAKSGADMGVAREAEGELHQDCEMGEGYRHVDEGKTNSGLWEALRVIPKAWEAPVVFLLKLTIPQPAPSEWSRFFTSANISLCPIALLYACNSFMSFNHPIAFLLPNTHLPLWFVVLLASSSLAILHFITETEPPKTEKVPVVLAAFVMSVFWISTTAGELLNCLAALGVLLKLPAALLGLTVLAWGNSVGDLVADVALAKAGQPLLAMAGCFAGPMFNMLVGLGTALVIQTANNYPEAYQLQFHIGIVIAFVFLLFSLMGSLLVVIWCRFRVPRFWGFCLVVLYIVFMATSLLMAEYSP 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7419424 7424058 + Carg27628-RA Car10g00936 155838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00936 538 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 284 534 - -
Car10g00936 538 PANTHER NA+/CA2+ K+ INDEPENDENT EXCHANGER 11 240 - -
Car10g00936 538 Pfam Sodium/calcium exchanger protein 382 531 IPR004837 GO:0016021|GO:0055085
Car10g00936 538 Pfam Sodium/calcium exchanger protein 91 231 IPR004837 GO:0016021|GO:0055085
Car10g00936 538 Gene3D - 121 243 IPR044880 -
Car10g00936 538 Gene3D - 313 531 IPR044880 -
Car10g00936 538 PANTHER MITOCHONDRIAL SODIUM/CALCIUM EXCHANGER PROTEIN 11 240 - -
Car10g00936 538 PANTHER MITOCHONDRIAL SODIUM/CALCIUM EXCHANGER PROTEIN 284 534 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00936 Car-Chr10:7419424 Car11g00616 Car-Chr11:3354806 4.60E-16 dispersed
Car10g00936 Car-Chr10:7419424 Car14g00488 Car-Chr14:2620009 2.25E-51 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00936 K13754 - csv:101209909 890.567