Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car10g00938 | ATGGATCAGCACGGGCATGGCCAGTCTCCATCCATGGGAGCGGTAGGCAGCGGAGGTCAGATAGCGTATGGTAGCAGCATGTACCATCCCAGCCAAATGACTGTCGGCCCGACATCTGGATCTCAGTCTACTAGTCAGCCAAGTGGAGCTCAGCTTGCTCAACATCAACTTGCTTATCAGCATATCCACCACCACCAGCAGCAACAGCTTCAACAACAGCTCCAGGCCTTTTGGTCAAATCAATACCAAGAGATTGAGAGAGTAATAGACTTCAAGAACCATAGTCTTCCCTTAGCAAGGATCAAGAAGATCATGAAGGCTGACGAAGACGTGCGAATGATATCAGCCGAGGCACCTGTTTTATTCGCTAGAGCATGTGAAATGTTCATCCTAGAATTGACTTTACGGTCATGGAATCATACCGAAGAGAACAAGCGTAGGACACTGCAAAAGAATGACATTGCTGCAGCTATCACAAGAACTGATATCTTCGACTTTCTCGTTGATATCGTGCCAAGGGAGGATCTGAAAGATGAAGCACTCACGTCGATTCCAAGAGGCTCAATAACGGTCGGGCCCCCCGGAGATGCACTTCCTTATTGCTATATGTCGTCTCAGCACGCACCTCAGGTTGGGACACCAGGAATGATTATGGGCAAGCCCGTGATGGACCCAGGTAGTTATGCTCAACAATCACACCCTTACATGCCTCCACAAATGTGGCAGCACGGCCAAGATCGAACCCCGACCCATCAATAG | 759 | 49.28 | MDQHGHGQSPSMGAVGSGGQIAYGSSMYHPSQMTVGPTSGSQSTSQPSGAQLAQHQLAYQHIHHHQQQQLQQQLQAFWSNQYQEIERVIDFKNHSLPLARIKKIMKADEDVRMISAEAPVLFARACEMFILELTLRSWNHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPREDLKDEALTSIPRGSITVGPPGDALPYCYMSSQHAPQVGTPGMIMGKPVMDPGSYAQQSHPYMPPQMWQHGQDRTPTHQ | 252 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 7487376 | 7488134 | + | Carg27604-RA | Car10g00938 | 155840 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car10g00938 | 252 | PANTHER | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-9 | 1 | 247 | - | - | |
| Car10g00938 | 252 | MobiDBLite | consensus disorder prediction | 228 | 252 | - | - | |
| Car10g00938 | 252 | Gene3D | Histone, subunit A | 57 | 173 | IPR009072 | GO:0046982 | |
| Car10g00938 | 252 | Pfam | Histone-like transcription factor (CBF/NF-Y) and archaeal histone | 95 | 158 | IPR003958 | - | |
| Car10g00938 | 252 | MobiDBLite | consensus disorder prediction | 232 | 252 | - | - | |
| Car10g00938 | 252 | PANTHER | HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED | 1 | 247 | - | - | |
| Car10g00938 | 252 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
| Car10g00938 | 252 | MobiDBLite | consensus disorder prediction | 24 | 53 | - | - | |
| Car10g00938 | 252 | SUPERFAMILY | Histone-fold | 54 | 167 | IPR009072 | GO:0046982 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car10g00047 | Car-Chr10:201929 | Car10g00938 | Car-Chr10:7487376 | 5.44E-69 | dispersed | |
| Car10g00938 | Car-Chr10:7487376 | Car19g00234 | Car-Chr19:2355197 | 9.32E-76 | dispersed | |
| Car12g00072 | Car-Chr12:309865 | Car10g00938 | Car-Chr10:7487376 | 1.36E-07 | dispersed | |
| Car10g00938 | Car-Chr10:7487376 | Car11g01211 | Car-Chr11:9853090 | 4.70E-77 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4209 | PF00808 | CBFD_NFYB_HMF | 2.70E-18 | CL0012 | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car10g00938 | K08066 | - | csv:101209664 | 389.808 |