Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00948 ATGACACCCATTTTGAACTATGTTGTGTCCAAATGGCAAGCGTTGTCCACTTCTGATCATGCCTCTGTGGTTTCCATCAACTTATTTGTGGCACTTCTCTGTGCTTGTATTGTGATTGGGCATCTTCTGGAGGAGACTCGATGGATGAATGAGTCGATCACTGCACTCTTGATTGGTATGTTTGCTGGAATAGTCATTTTACTGGTCAGTCGTGGGAAAAGTTCGCATTTGTTGCTTTTCAGCGAAGATACATTCTTTATTTATCTTCTGCCACCGATTATATTCAATGCGGGGTTTCAGGTGAAAAAGAAGCAGTTCTTTGTCAACTTTATGACAATTATGCTGTTTGGTGCAATTGGTACATTAGTCTCGTGTTTCATCATCTCGTTAGGAGCTTTTCAGTTCTTTAAGAAAATGGATGTTGGATCACTGGATATTGCTGATATTTTAGCGATTGGAGCTATATTTGCCGCAACGGATTCTGTATGCACGCTTCAGATATTAAGCCAGGACGAAACCCCTCTACTCTACAGTCTCGTATTTGGGGAGGGCGTGGTCAATGACGCTACGTCTGTGGTGCTTTTCAATGCTATTCAAAGCATAGATCTCAGCAACATTGATGCAAGAGTTGCTATACATTTTCTTGGGAGCTTCTTTTATCTGTTTTCGACGAGCACTCTACTCGGAGTATTTGTTGGGCTGCTGAGTGCTTATATAATCAGAAAGTTATACTTTGGCAGGCACTCGACAGATCGTGAGGTCGCTCTTATGATACTCATGGCGTATCTTTCGTATATGCTGGCTGAATTACTAGATTTGAGTGGCATTCTCACAGTGTTCTTTTGTGGAATTGTAATGTCACATTATACCTGGCATAATGTGACTGAGAGCTCAAGAGTTACCACCAAACACGCGTTTGCTACCTTATCCTTCATTTCCGAGTCATTTATCTTCGTTTATGTCGGCATGGATGCATTAGACATCGAGAAGTGGAGCTTCGTTAGTGATAGTCCGGGGACATCGGTTGCTGTGAGCGCAATGTTACTCGGCCTGGTTATGGTTGGAAGAGCTGCTTTTGTTTTTCCATTATCGTTTCTATCCAACTTAGCTAAAAAATCAGCAGACGAGAAAATTACGTTCAGGGAACAGGTTATCATTTGGTGGGCTGGTCTCATGAGAGGGGCTGTCTCCATTGCTCTAGCTTATCACCAGTTCACCAGAGCAGGGCACACTCAACTACGAGGGAATGCGATGATGATCACTAGTACCGTAACCGTTGTCCTCTTCAGCACGATGGTGTTTGGATTATTAACCAAGCCTCTTATTAAGTGTTTGATACCCCACCCGAAACTCACGACCAGCATGCTATCGGACCCTGCGACTCCAAAATCATTCTCGGTTCCGCTACTTGGAAGCGCACAAGATTCAGAGCTAGATCTTGACAGCCTCCATGTTCCTCGTCCAACGAGTATACGCGCATTCCTTGCAACTCCTACGCACACTGTGCATCGGTACTGGCGAAAGTTCGACGACGCCTTCATGCGTCCAATGTTTGGGGGTCGGGGTTTTGTTCCTTTTGTCCCAGGATCGCCAACCGAAAGGGGAGGGCATTGA 1614 44.73 MTPILNYVVSKWQALSTSDHASVVSINLFVALLCACIVIGHLLEETRWMNESITALLIGMFAGIVILLVSRGKSSHLLLFSEDTFFIYLLPPIIFNAGFQVKKKQFFVNFMTIMLFGAIGTLVSCFIISLGAFQFFKKMDVGSLDIADILAIGAIFAATDSVCTLQILSQDETPLLYSLVFGEGVVNDATSVVLFNAIQSIDLSNIDARVAIHFLGSFFYLFSTSTLLGVFVGLLSAYIIRKLYFGRHSTDREVALMILMAYLSYMLAELLDLSGILTVFFCGIVMSHYTWHNVTESSRVTTKHAFATLSFISESFIFVYVGMDALDIEKWSFVSDSPGTSVAVSAMLLGLVMVGRAAFVFPLSFLSNLAKKSADEKITFREQVIIWWAGLMRGAVSIALAYHQFTRAGHTQLRGNAMMITSTVTVVLFSTMVFGLLTKPLIKCLIPHPKLTTSMLSDPATPKSFSVPLLGSAQDSELDLDSLHVPRPTSIRAFLATPTHTVHRYWRKFDDAFMRPMFGGRGFVPFVPGSPTERGGH 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8052594 8058112 + Carg27093-RA Car10g00948 155850
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00948 537 TIGRFAM b_cpa1: sodium/hydrogen exchanger 3 24 445 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Car10g00948 537 PRINTS Na+/H+ exchanger signature 84 95 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Car10g00948 537 PRINTS Na+/H+ exchanger signature 98 112 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Car10g00948 537 PRINTS Na+/H+ exchanger signature 113 121 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Car10g00948 537 PRINTS Na+/H+ exchanger signature 153 163 IPR004709 GO:0006814|GO:0006885|GO:0015385|GO:0016021|GO:0055085
Car10g00948 537 PANTHER SODIUM/HYDROGEN EXCHANGER 7 536 IPR018422 GO:0006812|GO:0015299|GO:0016021
Car10g00948 537 PANTHER SODIUM/HYDROGEN EXCHANGER 2 7 536 - -
Car10g00948 537 Pfam Sodium/hydrogen exchanger family 29 443 IPR006153 GO:0006812|GO:0015299|GO:0016021|GO:0055085
Car10g00948 537 Gene3D - 145 197 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g01079 Car-Chr8:7346810 Car10g00948 Car-Chr10:8052594 0 dispersed
Car10g00948 Car-Chr10:8052594 Car11g01051 Car-Chr11:8054318 0 dispersed
Car10g00948 Car-Chr10:8052594 Car18g00580 Car-Chr18:6521603 1.31E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00948 - - csv:101214934 962.214