Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g00964 ATGGGTTGTGTTCTCATGATTATTATCTTCATGTCCATACCTTTTTCAACGCAGAACTCCCACATTTTGATTGCTAACTCACCATTGAATGCAGCAGAGAGCTTCGATGTTGAAGAGTTAGAGAGGGTTTCGGGGGAAGATGAGAGTCGAGGAAATGAGCCTTTCATTCTGGAGAGATTCAGAGCTCTACTTGGACTCAAGAGCTTACCATCGGATCTTTCGTTTTCGCCGTCGCCGTCGCCGTCGCCGTCTCCATCACCGGCAGCCATTGCTCCTTCCCCTGTTCATATGGCAACTCATCGAGTGCACATTCATGAGCATTCCCACCCTCATCAGCTTCGCTTGCACAAGAGACGACCAGTATACAAACCTAAAAGAGAGGAAGATGCAAGAGAAGGAAGAGTCAGAAAAATTCTTGTTGCAGTTCTTGTGTCTGCAGGAGTCACCATTTTGATATGCTCTATTATTGCCTTTTGGGTCTGCAAGAAGTTCAAAACTCAGAGAGAGGAAGCCAAGGAGAAGCTTTCTGTTAAGAGTGAAACAGTAGAGAAGTCAGCTAAACCAAATTCACCAAAATCACCAAAATCTGGCCTTGATCCGTTCGATCTCGGTATGCTTGGAATGGATGCTGAAGAAGAACAGACCCAATGTTCTGTAAGTGAAAAGGAGATATCTGTTCATAAAGAGGGGGAAAGGGGCCAAGAGATGTTAGATTCAGAATTTGATAATGTAAGTGTTTCTTCAACCAAGGAAATGATGTATGTTCATGAGGAAGATGATAGTAAATCAATACAATGCGTATCTGCTAAAGCTGATTCCTCATCTGGGGATAGAATTACTCCTGTTAAATCTTGTTCTTCTGATGATGAGGAATCATTCCATTCTTGTGGTGATTCCAATTTGTCGAATGCTCGCCTTTCAAATGCTTCAGAATCTTCTTCTGCTAATGTGATAACAAAATCTACTTGTTCAGTGCCAACTATGAACTTACCAAGTAAATTGGAAACAACACAATGTGATGATTCTAACAAACCATCAACTTCTGACCAGTCGCATATTACCCTTTCTCCTTGCAATCCAGAAAGCAAAATGCAGATGGTTTCCCTCTCTGTAGGTGGCCAAAAGAATGTCCCATCTATATCTCCGCCTCCGCCACCACCGCCGCCACCGCCGCCAATCACGGATCGCAGCTCTTTTTCCCTCTCTTCACCCTTTTCAACTGGATCTACTTCCTCATCTGCATTGTTAAGATCATCATCTCCAGCAATGTCAGATTCTTCTTCGTTATCTCAAATACCATGGAATGATCTGACATCACCTAATCCTGCTGCTAAACCTTCACTACCATCATCTTCTATCCCTCCACCCCCTTCTCCACCACCAAGTTTGAAAGCAAAGGCTTACTCTTTCAAAACTCCACCACCTCTTCCTTCCAAGCTCCCTCAATTCATGGCATTTGGAAAAGAGGGAAATTCGCGGCCCAAACTTAAGCCTCTCCACTGGGACAAAGTAAGAGCTGCACCAGATCGATCAATGGTTTGGGACAAGCTAAGATGGAGTTCATTTGAGCTAGATGAAGAAATGATTGAGTCACTATTTGGCTACAACCAACATGATTCAATGAAGAATGGTGATGCTAGCAACAAAAGCCCTTCTCCAACCAAGCATATACTAGAGGCAAAGAGACTTCAGAACCTAACCATTCTCTTAAAAGCCCTGAATCTCTCTACAGAACAAGTTTGTGAAGCCATAGAACAAGGGACGGGGATGCGTTTGAGACAACTTGAAGCACTGGTGAAGATGGTACCAACACAGGAAGAAGAGGCCAAATTGTTAAGCTATGAAGGAAACATCGGTGAATTGGGGTTTACAGAAAATTTTGTGATATCAATTCTGAAAATACCATTCGCCTTCCAACGAGTAGAAGCCATGCTTTACAGAGAAACTTTTGAAGATGAAGTGAATCATCTCCGGAATTCGTTTTCCATACTAGAGGAAGCCTGTAAGGAGCTAAAATCGAGCAGGCTCTTCCTGAAACTACTGGAAGCGGTGCTAAAAACAGGGAACCGAATGAACGTCGGAACAAGCAGAGGAGGCGCAAGAGCATTCAAACTAGACGCACTCCTAAAACTATCCGACGTCAAAGGAACCGACGGAAAAACCTCCCTACTCCACTTCGTAGTGCAAGAAATGATCCGATCAGAAGGAATCAGAGTGTCCGGTAGCATAATGGGGAAAATCAGCCAAAAAAACAAATCGAGAACAATAGAAGAAAGAGAGAACGATTACCGAAGAATGGGATTAGATCTGGTGTCCGGCCTGAGCACGGAATTGCACAACGTGAAGCGAGCGGCAACGATCGATCTGAAAGTTGTTGCAAGCTTGAGGGGGAATCTGAACGACGGAATGGCGAAACTGCAAAAACTGGTGGGGAAGGAGTTGAGCGTGGATGAAAGGAGCGGGAATTTCGTAGGCGCCATGAAGGGATTCATGAGCTACGTGAAGAAGACGATGGAGGAGGTGAGGAAGGACGAAGAAGGGGTGATGTCGAGCGTGAGGGAAATCACAGAGTACTTCCATGGAAATGTGAGCAAAGAGGAGACAAATCCGCTGAGGATATTTGTGATTGTGAGAGATTTTCTTGGAATGTTGGACAGTGTTTGTAAGAGCTTCAAGATTGGAAGTTCATAG 2691 44.22 MGCVLMIIIFMSIPFSTQNSHILIANSPLNAAESFDVEELERVSGEDESRGNEPFILERFRALLGLKSLPSDLSFSPSPSPSPSPSPAAIAPSPVHMATHRVHIHEHSHPHQLRLHKRRPVYKPKREEDAREGRVRKILVAVLVSAGVTILICSIIAFWVCKKFKTQREEAKEKLSVKSETVEKSAKPNSPKSPKSGLDPFDLGMLGMDAEEEQTQCSVSEKEISVHKEGERGQEMLDSEFDNVSVSSTKEMMYVHEEDDSKSIQCVSAKADSSSGDRITPVKSCSSDDEESFHSCGDSNLSNARLSNASESSSANVITKSTCSVPTMNLPSKLETTQCDDSNKPSTSDQSHITLSPCNPESKMQMVSLSVGGQKNVPSISPPPPPPPPPPPITDRSSFSLSSPFSTGSTSSSALLRSSSPAMSDSSSLSQIPWNDLTSPNPAAKPSLPSSSIPPPPSPPPSLKAKAYSFKTPPPLPSKLPQFMAFGKEGNSRPKLKPLHWDKVRAAPDRSMVWDKLRWSSFELDEEMIESLFGYNQHDSMKNGDASNKSPSPTKHILEAKRLQNLTILLKALNLSTEQVCEAIEQGTGMRLRQLEALVKMVPTQEEEAKLLSYEGNIGELGFTENFVISILKIPFAFQRVEAMLYRETFEDEVNHLRNSFSILEEACKELKSSRLFLKLLEAVLKTGNRMNVGTSRGGARAFKLDALLKLSDVKGTDGKTSLLHFVVQEMIRSEGIRVSGSIMGKISQKNKSRTIEERENDYRRMGLDLVSGLSTELHNVKRAATIDLKVVASLRGNLNDGMAKLQKLVGKELSVDERSGNFVGAMKGFMSYVKKTMEEVRKDEEGVMSSVREITEYFHGNVSKEETNPLRIFVIVRDFLGMLDSVCKSFKIGSS 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9110351 9114200 - Carg27900-RA Car10g00964 155866

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car10g00964 896 MobiDBLite consensus disorder prediction 172 200 - -
Car10g00964 896 Pfam Formin Homology 2 Domain 488 884 IPR015425 -
Car10g00964 896 MobiDBLite consensus disorder prediction 105 128 - -
Car10g00964 896 MobiDBLite consensus disorder prediction 269 297 - -
Car10g00964 896 ProSiteProfiles Formin homology-2 (FH2) domain profile. 486 896 IPR015425 -
Car10g00964 896 MobiDBLite consensus disorder prediction 378 395 - -
Car10g00964 896 MobiDBLite consensus disorder prediction 396 446 - -
Car10g00964 896 MobiDBLite consensus disorder prediction 447 463 - -
Car10g00964 896 Coils Coil 647 667 - -
Car10g00964 896 MobiDBLite consensus disorder prediction 325 377 - -
Car10g00964 896 MobiDBLite consensus disorder prediction 105 121 - -
Car10g00964 896 MobiDBLite consensus disorder prediction 325 471 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g00964 - - - bhj:120070661 1363.59
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car05g01054 Car10g00964 CCT
Car10g00964 Car11g00952 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01894 Car-Chr4:11087285 Car10g00964 Car-Chr10:9110351 1.21E-118 dispersed
Car10g00964 Car-Chr10:9110351 Car16g00567 Car-Chr16:3586045 5.01E-110 dispersed
Car19g00146 Car-Chr19:1276446 Car10g00964 Car-Chr10:9110351 5.37E-115 dispersed
Car04g00285 Car-Chr4:1601428 Car10g00964 Car-Chr10:9110351 1.04E-103 transposed
Car10g00964 Car-Chr10:9110351 Car11g00952 Car-Chr11:6191174 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi14g193 . . . . . . . . Cmo10g01196 Cmo11g01174 . . . . Sed04g0465 . . Bhi02g02104 Tan09g0197 Cmetu02g0328 . Hepe09g1587 . . . . . . . . . . . Cone5ag0041 . Lsi06g00120 . Chy08g01021 . . . . . Bpe05g00226 . . Bma05g00280 . . . Cma10g01113 Cma11g01134 Car10g00964 Car11g00952 Cpe04g00158 . . . . . . . . Cla03g01635 Cam03g1721 Cec03g1767 Cco03g1771 Clacu03g1743 Cmu03g2293 Cre03g1973 . Csa01g02771 . Cme02g00090
Vvi14g300 . . . Bda12g00411 . Bpe09g00593 . . Cmo10g01196 . Cma05g01114 . Car05g01054 . . . Cpe11g00905 . . . . . . . . . . . . . . Cone10ag0765 Cone3ag0788 . . . . . Cme05g01616 . . . . . . . . . Cmo05g01128 . Cma10g01113 . Car10g00964 . . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car19g00146 . 183 986 FH2 protein (formin) Gene Family AT3G25500 52.2 7.2e-193 671.8
Car04g01894 . 426 902 FH2 protein (formin) Gene Family AT3G25500 65.2 4.1e-164 576.2
Car02g00366 . 463 885 FH2 protein (formin) Gene Family AT3G25500 62.3 1.8e-140 497.7
Car10g00964 CCT,CST 489 890 FH2 protein (formin) Gene Family AT3G25500 50.7 2.0e-102 371.3
Car11g00952 CST 382 778 FH2 protein (formin) Gene Family AT3G25500 51.1 9.9e-102 369.0
Car02g01415 . 654 1100 FH2 protein (formin) Gene Family AT2G43800 60.5 5.4e-141 499.2
Car19g00146 . 502 1003 FH2 protein (formin) Gene Family AT2G43800 55.3 4.6e-140 496.1
Car02g00366 . 463 901 FH2 protein (formin) Gene Family AT2G43800 54.8 5.4e-125 446.0
Car16g00567 CCT,ECH 511 649 FH2 protein (formin) Gene Family AT4G15200 67.1 4.5e-46 183.0
Car09g00837 CCT,ECH 502 640 FH2 protein (formin) Gene Family AT4G15200 66.0 2.2e-45 180.6
Car09g00837 CCT,ECH 502 947 FH2 protein (formin) Gene Family AT5G54650 67.0 1.8e-168 590.5
Car02g00124 CST 465 932 FH2 protein (formin) Gene Family AT5G54650 59.1 1.7e-150 530.8
Car20g00517 CST 417 863 FH2 protein (formin) Gene Family AT5G54650 58.6 5.1e-139 492.7
Car02g01415 . 657 1058 FH2 protein (formin) Gene Family AT5G54650 50.6 9.1e-104 375.6
Car02g00366 . 29 904 FH2 protein (formin) Gene Family AT5G67470 57.0 5.0e-227 785.0
Car19g00146 . 540 1003 FH2 protein (formin) Gene Family AT5G67470 58.9 1.3e-134 478.0
Car04g01894 . 446 898 FH2 protein (formin) Gene Family AT5G67470 59.7 9.3e-133 471.9
Car02g01415 . 637 1102 FH2 protein (formin) Gene Family AT5G67470 57.8 6.0e-132 469.2
Car11g00952 CST 382 780 FH2 protein (formin) Gene Family AT5G67470 50.7 3.8e-102 370.2
Car04g00285 . 351 827 FH2 protein (formin) Gene Family AT1G59910 51.3 3.3e-125 446.8
Car19g00146 . 582 962 FH2 protein (formin) Gene Family AT5G48360 52.5 1.4e-100 364.8
Car02g01415 . 678 1059 FH2 protein (formin) Gene Family AT5G48360 51.8 2.0e-99 360.9
Car02g00366 . 487 862 FH2 protein (formin) Gene Family AT5G48360 50.5 2.0e-91 334.3
Car11g00952 CST 171 780 FH2 protein (formin) Gene Family AT3G05470 57.5 9.7e-159 558.1
Car16g00567 CCT,ECH 509 923 FH2 protein (formin) Gene Family AT3G05470 50.1 5.1e-107 386.3
Car02g00366 . 467 861 FH2 protein (formin) Gene Family AT3G05470 51.4 2.8e-105 380.6
Car02g01412 . 874 1185 FH2 protein (formin) Gene Family AT1G42980 50.2 3.5e-68 255.8
Car19g00151 . 965 1273 FH2 protein (formin) Gene Family AT1G42980 50.3 7.8e-68 254.6
Car02g01412 . 1 1192 FH2 protein (formin) Gene Family AT1G31810 64.5 0.0e+00 1214.9
Car19g00151 . 1 1275 FH2 protein (formin) Gene Family AT1G31810 66.6 0.0e+00 1204.9
Car10g00196 CCT,CST 1332 1653 FH2 protein (formin) Gene Family AT5G07650 75.2 5.0e-130 462.6
Car02g01412 . 858 1188 FH2 protein (formin) Gene Family AT5G07650 61.0 3.3e-110 396.7
Car09g00362 CCT 987 1309 FH2 protein (formin) Gene Family AT5G07650 63.2 1.4e-108 391.3
Car19g00151 . 949 1275 FH2 protein (formin) Gene Family AT5G07650 60.6 3.1e-108 390.2
Car02g00851 . 912 1231 FH2 protein (formin) Gene Family AT5G07650 61.4 5.0e-106 382.9
Car11g00171 CCT,CST 1325 1613 FH2 protein (formin) Gene Family AT5G07650 64.0 1.2e-104 378.3
Car01g00745 . 973 1285 FH2 protein (formin) Gene Family AT5G07650 64.2 3.6e-104 376.7
Car01g01277 CCT 1024 1390 FH2 protein (formin) Gene Family AT5G07650 57.2 4.7e-104 376.3
Car10g00436 . 887 1217 FH2 protein (formin) Gene Family AT5G07650 59.0 4.7e-104 376.3
Car10g00196 CCT,CST 1257 1646 FH2 protein (formin) Gene Family AT5G07770 68.0 1.1e-139 494.2
Car09g00362 CCT 918 1308 FH2 protein (formin) Gene Family AT5G07770 59.4 3.8e-119 426.0
Car02g01412 . 794 1183 FH2 protein (formin) Gene Family AT5G07770 56.8 7.2e-118 421.8
Car19g00151 . 885 1274 FH2 protein (formin) Gene Family AT5G07770 56.0 4.0e-116 416.0
Car02g00851 . 835 1223 FH2 protein (formin) Gene Family AT5G07770 56.1 1.8e-113 407.1
Car01g00745 . 896 1285 FH2 protein (formin) Gene Family AT5G07770 58.4 9.1e-113 404.8
Car01g01277 CCT 961 1382 FH2 protein (formin) Gene Family AT5G07770 54.6 1.6e-112 404.1
Car10g00436 . 810 1209 FH2 protein (formin) Gene Family AT5G07770 55.0 3.5e-112 402.9
Car11g00171 CCT,CST 1205 1603 FH2 protein (formin) Gene Family AT5G07770 55.0 1.0e-111 401.4
Car09g00362 CCT 892 1316 FH2 protein (formin) Gene Family AT3G32400 74.4 6.2e-171 597.8
Car01g01277 CCT 936 1392 FH2 protein (formin) Gene Family AT3G32400 67.2 2.2e-160 562.8
Car02g00851 . 806 1232 FH2 protein (formin) Gene Family AT3G32400 64.8 8.1e-147 517.7
Car10g00196 CCT,CST 1257 1653 FH2 protein (formin) Gene Family AT3G32400 66.0 6.0e-142 501.5
Car10g00436 . 795 1218 FH2 protein (formin) Gene Family AT3G32400 62.9 7.9e-142 501.1
Car02g01412 . 794 1188 FH2 protein (formin) Gene Family AT3G32400 66.0 3.0e-141 499.2
Car19g00151 . 885 1275 FH2 protein (formin) Gene Family AT3G32400 65.4 6.2e-139 491.5
Car01g00745 . 867 1285 FH2 protein (formin) Gene Family AT3G32400 53.8 9.1e-114 407.9
Car11g00171 CCT,CST 1192 1613 FH2 protein (formin) Gene Family AT3G32400 51.1 1.5e-111 400.6
Car09g00362 CCT 1 1316 FH2 protein (formin) Gene Family AT2G25050 55.7 0.0e+00 1173.3
Car02g00851 . 1 1232 FH2 protein (formin) Gene Family AT2G25050 52.6 2.2e-296 1015.8
Car10g00436 . 1 1218 FH2 protein (formin) Gene Family AT2G25050 53.0 6.3e-291 997.7
Car10g00196 CCT,CST 1258 1653 FH2 protein (formin) Gene Family AT5G07780 62.7 5.9e-123 438.3
Car09g00362 CCT 919 1309 FH2 protein (formin) Gene Family AT5G07780 54.3 1.4e-103 374.0
Car02g01412 . 795 1184 FH2 protein (formin) Gene Family AT5G07780 53.0 1.8e-103 373.6
Car11g00171 CCT,CST 1206 1613 FH2 protein (formin) Gene Family AT5G07780 52.0 1.2e-102 370.9
Car19g00151 . 886 1275 FH2 protein (formin) Gene Family AT5G07780 52.5 2.0e-102 370.2
Car02g00851 . 842 1231 FH2 protein (formin) Gene Family AT5G07780 53.3 3.5e-99 359.4
Car10g00436 . 817 1209 FH2 protein (formin) Gene Family AT5G07780 51.5 1.6e-96 350.5
Car01g00745 . 897 1285 FH2 protein (formin) Gene Family AT5G07780 52.5 6.1e-96 348.6
Car10g00196 CCT,CST 1 1662 FH2 protein (formin) Gene Family AT5G07740 60.8 0.0e+00 1102.0
Car11g00171 CCT,CST 8 1615 FH2 protein (formin) Gene Family AT5G07740 55.4 3.8e-286 982.2
Car10g00196 CCT,CST 1331 1660 FH2 protein (formin) Gene Family AT5G07760 74.4 1.3e-128 458.0
Car09g00362 CCT 993 1324 FH2 protein (formin) Gene Family AT5G07760 63.2 1.5e-108 391.3
Car02g01412 . 868 1184 FH2 protein (formin) Gene Family AT5G07760 62.9 2.0e-108 391.0
Car02g00851 . 911 1231 FH2 protein (formin) Gene Family AT5G07760 63.5 6.5e-107 386.0
Car19g00151 . 959 1275 FH2 protein (formin) Gene Family AT5G07760 61.6 3.2e-106 383.6
Car10g00436 . 886 1216 FH2 protein (formin) Gene Family AT5G07760 60.6 1.8e-104 377.9
Car01g00745 . 972 1285 FH2 protein (formin) Gene Family AT5G07760 64.6 1.9e-103 374.4
Car01g01277 CCT 1036 1390 FH2 protein (formin) Gene Family AT5G07760 58.7 1.3e-102 371.7
Car11g00171 CCT,CST 1324 1613 FH2 protein (formin) Gene Family AT5G07760 63.6 1.1e-101 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006698 1 1 1 1 1 1 2 2 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car10g00964 Car_Chr10 FPKM 2.236857 2.226901 2.042078 1.721765 3.827464 4.133373 4.128689 2.20701 2.37195 2.069062