Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g01041 ATGACGAGGAAGAAAGTGAAGCTGGCTTACATTGTGAACGACTCCGCAAGAAAGGCGACGTTCAAGAAGAGGAAGAGAGGGCTTATGAAGAAGGTGAGTGAATTGAGCACCCTTTGCGGGATTGAGGCATGCGCCATCGTGTTTAGCCCCTACGATGCTCAGCCCGAGCTGTGGCCTTCCCCCATCGGCGTCCAGCGCGTTCTCTCTCAATTCAAGAAGATGCCCGAGATGGAGCAGAGCAAGAAAATGGTGAACCAAGAGACGTTTCTGCGGCAGAGGATCGCCAAGGCCAATGACCAACTGAAGAAGATGAGAAAGGACAACCGGGAGAAAGAGATGACGCGGCTTATGTTTCAAAGCCTCACCGCTGCCAAAGGCCTTCATGCACTCAACATGCTCGACTTGAACGACCTCACTTGGCTCATTGATCAAAATCTCAAAGACATTACTAAACGCATTGACTCTCTCAAGAAGCCTCCGCCCCACTCTCAGCCACACCCTCACCCTCACCCTCAGCCGCCTCCCCCGCCGCAGACCGCCGCCTGGCTTATGGAGCTTGTCAGCCCTCAGGACCAAATGGGGTTCGTGGCGGATGACATGCTCTTGCCCTTCGGGGATCAAACTTATAGCCATAATAATGCAATGTGGTCAAATGCCTTTTTCCCTTAG 669 52.91 MTRKKVKLAYIVNDSARKATFKKRKRGLMKKVSELSTLCGIEACAIVFSPYDAQPELWPSPIGVQRVLSQFKKMPEMEQSKKMVNQETFLRQRIAKANDQLKKMRKDNREKEMTRLMFQSLTAAKGLHALNMLDLNDLTWLIDQNLKDITKRIDSLKKPPPHSQPHPHPHPQPPPPPQTAAWLMELVSPQDQMGFVADDMLLPFGDQTYSHNNAMWSNAFFP 222
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10652330 10653074 - Carg28247-RA Car10g01041 155943
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g01041 222 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Car10g01041 222 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Car10g01041 222 MobiDBLite consensus disorder prediction 162 179 - -
Car10g01041 222 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 182 - -
Car10g01041 222 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Car10g01041 222 MobiDBLite consensus disorder prediction 154 179 - -
Car10g01041 222 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Car10g01041 222 Gene3D - 13 97 IPR036879 GO:0003677|GO:0046983
Car10g01041 222 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 182 - -
Car10g01041 222 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Car10g01041 222 Coils Coil 87 114 - -
Car10g01041 222 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Car10g01041 222 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Car10g01041 222 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car06g00472 Car-Chr6:2606868 Car10g01041 Car-Chr10:10652330 1.18E-44 dispersed
Car10g01041 Car-Chr10:10652330 Car11g01007 Car-Chr11:7011197 1.96E-104 dispersed
Car10g01041 Car-Chr10:10652330 Car13g00298 Car-Chr13:5438566 1.99E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4210 PF00319 SRF-TF 2.00E-18 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g01041 - - csv:101203059 384.03