Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car10g01051 ATGTTCCATCCGAAGAAAGCGTCGAGTATGAATTCTCACGAGAGAGGGGTGTGCGTACAAGGCGACTCTGGTCTCGTCCTCACCACCGACCCCAAGCCCCGCCTCCGTTGGACTGTCGAGCTTCATGAGCGCTTTGTCGACGCTGTCACTCAGCTCGGAGGCCCTGATAAGGCAACCCCAAAGACCATCATGCGAGTTATGGGTGTAAAGGGTCTTACCCTTTACCACCTCAAGAGTCATCTCCAGAAATTTAGACTGGGAAAGCAGCCCCACAAGGAGTTCAATGATCATTCAATTAAGGATGGTATGCGAGCTTCAGGTCTAGAACTTCATCGAAACACGATTTCTTCATCCAATATGATCAACCGCACCATGAATGATAGCAACTCAAACATGGTTGATGTGATTAGGATGCAAATGGAGGTGCAGAGAAGATTGCACGAACAATTAGAGGTGCAAAGACACCTGCAGTTGCGGATCGAGGCTCAAGGGAAATATATGCAGAGTATACTAGAGAAAGCTTGTCAAACCCTTGCCGGTGAGGACATGGCAGCTTCCGGGGTCTACAAGCTCATGCCTGGAATCCCAAGCAATAATAATCAACAAGGTGTTGGCGACATGGGCGGAGGTATCAAAGATTTTGGGACCCCTCTCGGCTTCCCTTCATTTCAAGACCTCAACCTCTATGGAGGCCACCAGCTGGATCTTCAGCAAAACGTGGATGGATTCATGCCTCACAACGACAGCTTACTGTGCTTGGGAAAGAAGAAGCCGCGGCCACCTGCAAACTACGGATCCGGAAAATATGCGTTGGACTGGCCGGATGATCTCCGGCTGCAAGGCATAGGAATGACGCCGCCGCAGCAAGCAGATCATGAATTCAAAGACATTAACATTGTTGCGACGCTGGCAGAAAGAGGTCATTTGGAGGAAATGTATGAGGCAAAGCCAGTGGGATCGGATGAGAGCATGCTAGGGGATCACAAGAAATATGATACCAATGACAATGCGTCCTTAAAGCTTCAGAGGCCGTCGCCCAGGAGGGCACCCCTTTCAGCAGAAACAGTCAACCAGTCTCTTACAAGCGCTCCGCAGGTCACACTTTCACCTTTTGGTTAA 1119 49.96 MFHPKKASSMNSHERGVCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDHSIKDGMRASGLELHRNTISSSNMINRTMNDSNSNMVDVIRMQMEVQRRLHEQLEVQRHLQLRIEAQGKYMQSILEKACQTLAGEDMAASGVYKLMPGIPSNNNQQGVGDMGGGIKDFGTPLGFPSFQDLNLYGGHQLDLQQNVDGFMPHNDSLLCLGKKKPRPPANYGSGKYALDWPDDLRLQGIGMTPPQQADHEFKDINIVATLAERGHLEEMYEAKPVGSDESMLGDHKKYDTNDNASLKLQRPSPRRAPLSAETVNQSLTSAPQVTLSPFG 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10841263 10843735 + Carg28234-RA Car10g01051 155953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car10g01051 372 MobiDBLite consensus disorder prediction 317 336 - -
Car10g01051 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 29 89 IPR017930 -
Car10g01051 372 Pfam Myb-like DNA-binding domain 35 83 IPR001005 -
Car10g01051 372 MobiDBLite consensus disorder prediction 351 372 - -
Car10g01051 372 MobiDBLite consensus disorder prediction 317 372 - -
Car10g01051 372 Pfam MYB-CC type transfactor, LHEQLE motif 134 177 IPR025756 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00435 Car-Chr1:2492594 Car10g01051 Car-Chr10:10841263 3.82E-37 dispersed
Car02g00488 Car-Chr2:3793714 Car10g01051 Car-Chr10:10841263 4.02E-101 dispersed
Car06g01068 Car-Chr6:8032374 Car10g01051 Car-Chr10:10841263 2.49E-35 dispersed
Car10g01051 Car-Chr10:10841263 Car14g01696 Car-Chr14:13483448 1.54E-68 dispersed
Car10g01051 Car-Chr10:10841263 Car19g00887 Car-Chr19:9140555 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4212 PF00249 Myb_DNA-binding 2.00E-06 CL0123 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car10g01051 - - csv:101217821 605.905