Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00003 ATGGATCCAGAAGCCCTCTCCGCCACTTTGTTCAAATGGGATCCTCGAGGAATGGTGGGGGGAGGCGGCGGCGCATCCCTCCCAGCACCACTGCCGCCCTACTCGCTGCGGCCCAGGGAATTGGGACTGGGAGGCCTGGAGGAGTTGTTCCAGGCTTACGGGATCAGGTACTACACCGCCGCTAAAATTGCGGAACTGGGATTCACCGTCAGCACCCTCCTGGACATGAAAGACGAAGAGTTGGAGGATATGATAAACAGCCTCTCTCATATTTTCCGGTGGGAGCTTCTGGTAGGTGAGAGATACGGAATTAAGGCTGCTGTAAGAGCCGAGCGCAGACGTGTAGATGACGAGATGGATTCCTCCAGGCGCCGGCACCTCTTCTCCAATGACACCCATAACAACGTGGTCCTGGATGCCCTTTCCCAGGAAGGGCTTTCGGAAGAGCCGGTGCAGCAGGAAAAAGAGGTGGTGGGGAGCGGAGGAGGAGGAACTTGGGAGGCAGTTGCAGCGGGTGAGATGAGGAAGAAGCAGCGGAAGAGAAACGGATCAAAGAAGAAGCAGGTGATGGTGATGGAGGAGGATCATCACGATGAAACTGAGGAGGGAGGTGGGGAGGAGGAGGATAATATGGAAGTCAGCGAGAGACAGCGGGAGCATCCATTCATCGTAACCGAGCCAGGGGAGGTTGCACGGGGGAAAAAGAACGGCCTTGACTATCTCTTCCACCTATATGAGCAGTGTCGTGAGTTTTTGATCCAAGTCCAGAACATTGCCAAGGAACGAGGAGAAAAATGTCCCACTAAGGTGACAAACCAGGTGTTTAGATATGCGAAGAAGGTGGGAGCAAGTTACATAAACAAGCCAAAAATGAGACACTACGTGCACTGCTATGCGTTGCATTGTCTGGACGAGGAAGCGTCCAACGCGTTGAGGAGGGTTTTCAAAGAGAGGGGTGAAAATGTGGGAGCTTGGCGACAGGCATGCTATAAGCCTTTGGTAGCCACAGCAGCTGCCCAAGGTTGGGACATCGATGCCATTTTCAACGCACATCCACGCCTCGCCATCTGGTATGTGCCCACTAAACTCCGCCAACTCTGCCACGCCGAGCGCAACAGTGCCAAAGCCTCCACCTCCGCCGCCGTAAATCACTTGCCATTTTAA 1164 54.3 MDPEALSATLFKWDPRGMVGGGGGASLPAPLPPYSLRPRELGLGGLEELFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMINSLSHIFRWELLVGERYGIKAAVRAERRRVDDEMDSSRRRHLFSNDTHNNVVLDALSQEGLSEEPVQQEKEVVGSGGGGTWEAVAAGEMRKKQRKRNGSKKKQVMVMEEDHHDETEEGGGEEEDNMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQNIAKERGEKCPTKVTNQVFRYAKKVGASYINKPKMRHYVHCYALHCLDEEASNALRRVFKERGENVGAWRQACYKPLVATAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNSAKASTSAAVNHLPF 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 14837 16670 + Carg24565-RA Car11g00003 155956

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00003 387 MobiDBLite consensus disorder prediction 172 216 - -
Car11g00003 387 MobiDBLite consensus disorder prediction 145 164 - -
Car11g00003 387 Pfam Floricaula / Leafy protein SAM domain 43 118 IPR035079 -
Car11g00003 387 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 212 374 IPR035209 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00003 - - - cmax:111484867 664.84
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00006 Car11g00003 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00006 Car-Chr10:29840 Car11g00003 Car-Chr11:14837 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g12 . . . . . . . . . . Cma10g00009 Cma11g00003 Car10g00006 Car11g00003 . . Cpe04g01641 . . . . . . . Cla06g01788 Cam06g1986 Cec06g2036 Cco06g2044 Clacu06g1943 Cmu06g1883 Cre06g2694 . . . . . . . . . . . . . . . . . Cmo10g00007 Cmo11g00003 . . . . . Cpe18g00943 . . . . . . . . . . . . . . Lsi06g01688 Csa01g00005 Chy02g02708 Cme02g02117
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g00003 CST 1 382 Orphan Transcription Factor Family AT5G61850 67.2 2.3e-121 433.0
Car10g00006 CST 1 385 Orphan Transcription Factor Family AT5G61850 66.8 3.0e-121 432.6
Car08g00177 CST 1 161 Orphan Transcription Factor Family AT1G06040 69.0 7.9e-60 227.3
Car04g00611 . 1 109 Orphan Transcription Factor Family AT1G06040 68.8 7.7e-39 157.5
Car16g00390 . 1 109 Orphan Transcription Factor Family AT1G06040 67.9 1.3e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007487 2 1 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 0 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4213 PF17538 C_LFY_FLO 1.40E-107 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00003 Car_Chr11 FPKM 0.472174 0.723804 0.0 0.0 1.756983 1.114111 1.245784 0.186282 0.198254 0.0