Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00004 ATGGCGCAGGTTTCTCAGTTGCCTTGCGACGGCGATGGCATTTGCATGCGCTGCCAGGCCAAGCCTTCCGACTTGGAGACGATCACTTGCAAAACTTGCGTCGCCCCTTGGCACGTCGGCTGTCTCTCAAATCCCCCTCAAATCCTGGCATCTACCCTTCAATGGGACTGTCCCGACTGTTCTCCCCCACCTGAAGATGCTTCCCTGCCTCCACCCGCCAGCTGTCCACTTCCCGTTACACCTTCCAATGACCTGGTTGCTGCGATTCGAGCCATTGAGGCCGATGCCTCCCTTACTGACCGCGAGAAGGCAAAGAAGCGCCAGGAGCTCCTCAGTGGAAAGTCTCAGTCAGAGAAGGACGATCATGATGCCAACGAAAAAAGAGGGGACGATGTTTTGGATTTGTTCGACGAGAGATTGAAGTGCTCCTTTTGCATGCAGTTACCAGAAAGGCCCGTCACTACTCCATGTGGCCACAATTTCTGCTTAAAATGTTTCCAGAAGTGGATTGGACAAGGAAAAAACACTTGTGCAAAGTGCCGCTGCGTGATTCCCTCCAAAATGGCTAGCCACCCCCGTATTAATTCCACACTTGTAGTGGCCATACGTATGGCTAAAATGTCAAAATCAATTATTTCTGGAGGATCTCAGAAGGTTTATCATGTTGTCCACAATCTAAATAGGCCAGATAAAGCCTATACCACCGACCGGGCACAAAAAAAAGGGAAAGCTAATGCTGCAAGTGGAAAAATATTTGTTACAATTCCATCTGATCATTTTGGTCCTATTCTTGCTGAAAATGATCCAGAGAGAAACCAAGGTGTTCTGGTTGGGGAATGCTGGGAGGATAGGTTAGAATGTCGTCAGTGGGGTGCTCACTTTCCACATGTTGCAGGCATAGCAGGGCAGTCAAATAACGGTGCACAATCAGTGGTACTTTCTGGTGGTTACCAAGATGATGAAGATCATGGGGAGTGGTTCCTCTACACTGGAAGTGGAGGTCGAGACCTTAGTGGGAACAAGCGTACAAGCAAGGATCAGTCTTTTGACCAGAAATTTGAGAAATCAAACAAAGCGCTACAAGTTAGTTGCTTGAATGGTTATCCTGTTAGAGTTGTTAGATCTCACAAAGAAAAGCGTTCCTCATATGCTCCAGAAAAGGGGTTGCGGTATGATGGAATTTATAGGATTGAGAAGTGTTGGCGTAAAGTGGGAATTCAGGGCTTTAAGGTATGTCGGTATTTGTTTGTTAGATGCGAAAATGATCCTGCACCATGGACAAGTGACGAACATGGAGATCGACCTAGACCCTTACCTGCAATTCCAGAGTTAAAAAAAGCAACAGACATTACGGAGAGGAAGAAAGATCCTTCATGGGACTTTGATGAGAATGATAGTCGGTGGAAGTGGAGCAAACCTCCACCAACGAGCAAGAAGTCGGTTGAACCCGAAGATTCTACTTCTGGGAAGAAGTCAAGGAGGAGAATGAGGCAGTCGCATAATATGAATGTTCGAGAAAGGTTACTGAAAGAATTTAGCTGCCTTATTTGCCGGGAGGTGATGAATCTGCCCATTACTACGCCTTGTGCCCATAACTTTTGTAAGTCATGTTTGGAAGGTGCTTTTGCGGGCAAGTCATTCTTGAGAGAGAGAAACAGTGGTGGACGGGCTCTTAGATCCCGGAAGAATGTCATGGCTTGCCCTTGTTGCCCGACGGATATATCTGATTTTCTACAGAATCTTCAGGTAAATAGAGAATTGTTGGATGTGATCGAGTCGTTGAAAAGTAAGATTGAAGAAGCGGATGCATCTGAGAAGCCCTGTGAAGACGAGATAGAAGGGGAAGGGGAAGAGGAACAGGAACAGGAAGAGGAGGGAAAAGATGGAAGCAACGGAAATGAAATCAGCCGCCCTGTGGAAACAAGAAAGCGAGCAAAGGTGGTGGTTAATGGTGGGGAGGAAAATGATTCGCCGTCAAGCCCCGTCCACGTGGATGATTTGGAATGA 2007 47.09 MAQVSQLPCDGDGICMRCQAKPSDLETITCKTCVAPWHVGCLSNPPQILASTLQWDCPDCSPPPEDASLPPPASCPLPVTPSNDLVAAIRAIEADASLTDREKAKKRQELLSGKSQSEKDDHDANEKRGDDVLDLFDERLKCSFCMQLPERPVTTPCGHNFCLKCFQKWIGQGKNTCAKCRCVIPSKMASHPRINSTLVVAIRMAKMSKSIISGGSQKVYHVVHNLNRPDKAYTTDRAQKKGKANAASGKIFVTIPSDHFGPILAENDPERNQGVLVGECWEDRLECRQWGAHFPHVAGIAGQSNNGAQSVVLSGGYQDDEDHGEWFLYTGSGGRDLSGNKRTSKDQSFDQKFEKSNKALQVSCLNGYPVRVVRSHKEKRSSYAPEKGLRYDGIYRIEKCWRKVGIQGFKVCRYLFVRCENDPAPWTSDEHGDRPRPLPAIPELKKATDITERKKDPSWDFDENDSRWKWSKPPPTSKKSVEPEDSTSGKKSRRRMRQSHNMNVRERLLKEFSCLICREVMNLPITTPCAHNFCKSCLEGAFAGKSFLRERNSGGRALRSRKNVMACPCCPTDISDFLQNLQVNRELLDVIESLKSKIEEADASEKPCEDEIEGEGEEEQEQEEEGKDGSNGNEISRPVETRKRAKVVVNGGEENDSPSSPVHVDDLE 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 19736 26518 + Carg24564-RA Car11g00004 155957
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00004 668 Pfam SAD/SRA domain 273 421 IPR003105 -
Car11g00004 668 ProSiteProfiles YDG domain profile. 270 418 IPR003105 -
Car11g00004 668 Coils Coil 584 604 - -
Car11g00004 668 MobiDBLite consensus disorder prediction 426 501 - -
Car11g00004 668 MobiDBLite consensus disorder prediction 426 469 - -
Car11g00004 668 Pfam RING-type zinc-finger 514 546 IPR027370 -
Car11g00004 668 ProSitePatterns Zinc finger RING-type signature. 529 538 IPR017907 -
Car11g00004 668 MobiDBLite consensus disorder prediction 100 127 - -
Car11g00004 668 MobiDBLite consensus disorder prediction 626 650 - -
Car11g00004 668 Pfam Zinc finger, C3HC4 type (RING finger) 142 180 IPR018957 GO:0046872
Car11g00004 668 ProSiteProfiles Zinc finger RING-type profile. 142 181 IPR001841 -
Car11g00004 668 ProSitePatterns Zinc finger PHD-type signature. 15 60 IPR019786 -
Car11g00004 668 MobiDBLite consensus disorder prediction 605 625 - -
Car11g00004 668 ProSiteProfiles Zinc finger RING-type profile. 514 570 IPR001841 -
Car11g00004 668 MobiDBLite consensus disorder prediction 601 668 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00004 Car-Chr11:19736 Car14g01658 Car-Chr14:13235930 1.04E-22 dispersed
Car04g01952 Car-Chr4:12967132 Car11g00004 Car-Chr11:19736 0 transposed
Car11g00004 Car-Chr11:19736 Car11g01265 Car-Chr11:10485826 2.18E-19 wgd
Car11g00004 Car-Chr11:19736 Car14g00699 Car-Chr14:3839377 2.11E-18 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00004 K10638 - csv:101220457 1116.68