Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00005 ATGGGTAACTGCTTCTCCGATCACGCCGCTGCCCGCTCTGCCGTTGGTGCTACTGTCTTCTCCCAAAATAATACTTCCAACGTCGCCATATCATTCTCTGCATCTAACTTGCGCGACCGTGATGTATTCTCAAAGTTCAATACCTGTCTGTCTGCTGATGCCATTGTTTCTTCAAAAAATTCTTATCGGAAGTTTTATTTTCCTCAGAGTGATCCAATGCTGGTTGTCTACGCAAAAAGACGGGACGGATCTCTAGAAGAGCTTGACCGCACTGAAGTAGTTCAAAATTCATTAAATCCAAAATGGATCCATAAGCTTAATATTAACTATCAATTTGAGGTTGTGCAAACTTTGGTGTTCTTTGTGTATGACGTTGATACTCAATATCACAGCCTAGGAGTAAAGATGCTGAAGCTAGATGAACAGCAATATCTTGGTGAAGCAACCTGTGTACTATCTGAGATAGTTACCCAATCAGACAGGTCACTTACATTGAATCTAGTATATAGAGAAGAGTCAGCCAGCTCTACTCATCCACACCACTGTGGAAAACTTACTGTTCATGCTGAGGAGTGTTTTAGCTCAAAGACCACAACAGAGATGATATTAAGGTGTTCAAACTTGGGACACAAGGATCTCTTCTCAAGAATTGACCCTTTTCTGGTTATTTCAAAAACTGTGGAGAGTAAGAGCTCCATTCCAGTTTGCAAAACTGAAGTAATAAAGAATGATTTAAATCCCACATGGAAGCCTGTGTTCCTGAATATGCAACAAGCTGGAAGCAAGGACAGCCCCTTAATAATAGAGTGTTTTAACTTCAATAGCAATGGAAGGCACGAGTTGATTGGAAAAGTTCAAAAGTCACTTGTGGAGTTGGAGAAGCTTTTTTTAAGTGGGGAGGGAGATAACTTATTCTCACTTCCTGCCGCTGGACATGATTACCATAACAAAGTACTAAAAAGCCAACTATTTGTGGACAAATTCACTGAGAGCGTCCAACAAACATTCCTTGATTACTTGGCTGGTGGCTATGAAATGAACTTCATGGTGGCTGTTGATTTCACGGCTTCAAATGGAAACCCTCGCCTTCCTGATTCCTTGCATTTCATTGATCCTTCAGGACGGCCAAATTCATACCAGCAAGCAATCATAGAAGTTGGAGAGGTATTGCAATTTTATGACTCAGATAAACGCTTTCCTGCCTGGGGGTTTGGAGCACGACCTATTGATGGTCCAGTCTCTCACTGTTTCAACCTAAATGGAAGTAGTCACTACTGTGAGGTTGAAGGAACTCGAGGAATTTTGATGGCATATACAAGTGCGCTCCATAATGTGTCTCTTGCAGGACCAACACTTTTTGGGCCTGTGATTAACAATGCTGCATTAATTGCCAGTCAGTCTCTTGCAAATGGTGGGCGGAAGTACTTTGTTTTGCTAATAATCACTGATGGAGTGGTAACAGATCTCCAAGAAACTAAAGATGCTATTGTGAAGGCATCGGATCTGCCACTGTCTATTCTCATTGTTGGAGTGGGTGGAGCTGACTTTAAAGAAATGGAGGTTTTAGATGCGGATAAGGGAGAGAGACTTGAAAGCGCAACTGGACGTGTTGCTTCACGAGATATAGTCCAGTTCGTTCCATTCCGTGATGTACAAGGTGGAGAGATTTCTGTTGTTCAAGCATTGCTAGCAGAAGTACCTCATCAATTTCTTACCCATGTTCGAAGTAGAGATGTTCAACCAAATTCTTGA 1752 41.89 MGNCFSDHAAARSAVGATVFSQNNTSNVAISFSASNLRDRDVFSKFNTCLSADAIVSSKNSYRKFYFPQSDPMLVVYAKRRDGSLEELDRTEVVQNSLNPKWIHKLNINYQFEVVQTLVFFVYDVDTQYHSLGVKMLKLDEQQYLGEATCVLSEIVTQSDRSLTLNLVYREESASSTHPHHCGKLTVHAEECFSSKTTTEMILRCSNLGHKDLFSRIDPFLVISKTVESKSSIPVCKTEVIKNDLNPTWKPVFLNMQQAGSKDSPLIIECFNFNSNGRHELIGKVQKSLVELEKLFLSGEGDNLFSLPAAGHDYHNKVLKSQLFVDKFTESVQQTFLDYLAGGYEMNFMVAVDFTASNGNPRLPDSLHFIDPSGRPNSYQQAIIEVGEVLQFYDSDKRFPAWGFGARPIDGPVSHCFNLNGSSHYCEVEGTRGILMAYTSALHNVSLAGPTLFGPVINNAALIASQSLANGGRKYFVLLIITDGVVTDLQETKDAIVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESATGRVASRDIVQFVPFRDVQGGEISVVQALLAEVPHQFLTHVRSRDVQPNS 583
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 26947 32749 - Carg24563-RA Car11g00005 155958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00005 583 Pfam Copine 366 581 IPR010734 -
Car11g00005 583 Pfam C2 domain 201 291 IPR000008 -
Car11g00005 583 Pfam C2 domain 33 162 IPR000008 -
Car11g00005 583 ProSiteProfiles C2 domain profile. 181 305 IPR000008 -
Car11g00005 583 ProSiteProfiles VWFA domain profile. 347 566 IPR002035 -
Car11g00005 583 ProSiteProfiles C2 domain profile. 26 165 IPR000008 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00005 - - - csv:101215724 974.926
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00008 Car11g00005 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00005 Car-Chr11:26947 Car15g00350 Car-Chr15:1861696 1.88E-24 dispersed
Car05g00691 Car-Chr5:4667143 Car11g00005 Car-Chr11:26947 0 transposed
Car10g00008 Car-Chr10:34808 Car11g00005 Car-Chr11:26947 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g18 . Blo16g00293 . . . Bpe13g00181 Bma06g00290 . . . Cma10g00011 Cma11g00006 Car10g00008 Car11g00005 . . Cpe04g01639 . . . . . . . . . . . . . . . . Cone13ag0266 Cone19ag0250 . . . . . . Bda11g01570 . . . . . . Cmo10g00009 Cmo11g00005 . . . . . Cpe18g00942 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000909 3 5 3 2 2 2 3 3 2 2 2 2 3 1 2 3 2 3 3 2 2 2 3 2 2 2 1 4 6 9 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00005 Car_Chr11 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0