Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00006 AATAAGAGAGGCTCCTCCTCTCATCTTCTCCTCCGTCTTGCCTTCCCACCGAACACCCTATCTATCAGCTTCAGCTTCAGCTTCAGCTTCAAGTTCTTCAAGTCGGTGGACATCATGGCTAGAGTTCTTGTTCAGTCCACAAATATTCCTGGTCTGGTCGGTGGAAGGAAGACTGGCCTATCAAGAGGATCAGTAAATGTAAAACGGGCTGTTAGAATGATGGCCAGCGTTCATGCACCTGGTTCGAGAATAAGAAGTTTCTCTGGACTTAGAGGATTTAATTCTTTGGATAACATGTTGAGAACTAGACAGGATTTTCATTCCAAGGTGGCCATTACAATCTCTTCTAGGCGACGAAAGGCTACCAGATGTGTCCCAAGAGCCATGTTTGAGCGATTCACAGAAAAGGCAATTAAAGTTATCATGCTTGCCCAGGAGGAAGCGAGGCGACTTGGTCACAATTTTGTTGGCACAGAGCAGATACTTTTAGGTCTTATTGGCGAAGGTACTGGTATCGCTGCCAAGGTTCTTAAATCCATGGGAATTAATCTTAAAGACGCGCGCGTGGAGGTGGAGAAGATAATTGGTCGGGGCAGCGGGTTTGTTGCTGTAGAAATTCCCTTCACTCCTCGTGCAAAGCGTGTTTTGGAACTTTCTCTCGAGGAAGCTCGCCAACTTGATCATGGGTTCAAGTCAGAGTCGTTGTTGTCTGCTGGAACTAATGTCACAATTATATTGGATCAGAGCACTTGCTTCTGGGTCTACTTCGTGAAGGTGAGGGTGTTGCAGCTCGTGTTCTTGAAAACTTGGGTGCTGATCCTAGTAACATTCGCACTCAGGCAAGAATTTCATCCCGACACTATACATTTATTTTATTTTATTTTTAACTTAATATTTTATAAATTGAGTGAACAGGTAATTCGAATGGTTGGTGAGAGCACAGAGGCTGTTGGTGCTGGTGTTGGAGGAGGGAGCAGTGGGAACAAGATGCCAACTCTGGAAGAGTACGGCACAAACTTAACTAAGCTGGCTGAAGAGGGTAAACTGGATCCTGTTGTTGGAAGGCAGCAGCAAATTGAACGTGTAACACAAATTTTGGGCCGGCGAACAAAAAATAATCCTTGCCTCATTGGTGAGCCTGGTGTTGGGAAAACTGCTATTGCAGAAGGCCTGGCACAAAGGATTGCTAATGGGGATGTTCCTGAAACAATCGAAGGAAAGAAGGTCATAACCCTGGATATGGGACTTCTCGTAGCTGGCACAAAATATCGTGGAGAGTTTGAGGAAAGATTAAAGAAACTTATGGAGGAAATTAAACAAAGTGATGAGATTATCCTTTTCATTGATGAGGTGCACACATTAATTGGAGCAGGGGCTGCAGAAGGAGCTATCGATGCGGCAAATATATTGAAACCTGCCCTTGCAAGAGGTGAACTGCAGGTGTGCATTGGAGCCACAACATTGGATGAATACAGGAAGCACATTGAGAAAGATCCGGCCTTAGAAAGGAGATTTCAGCCCGTCAAAGTGCCGGAACCGTCTGTGGATGAAACCATACAGATTTTGAAAGGCCTTAGAGAGCGCTATGAAATCCACCACAAACTTCGATACACGGATGAAGCATTAGTAGCTGCTGCACAACTGTCATACCAGTACATCAGGTATGTTACTATTGAGTGA 1680 44.88 NKRGSSSHLLLRLAFPPNTLSISFSFSFSFKFFKSVDIMARVLVQSTNIPGLVGGRKTGLSRGSVNVKRAVRMMASVHAPGSRIRSFSGLRGFNSLDNMLRTRQDFHSKVAITISSRRRKATRCVPRAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLDHGFKSESLLSAGTNVTIILDQSTCFWVYFVKVRVLQLVFLKTWVLILVTFALRQEFHPDTIHLFYFIFNLIFYKLSEQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQVCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYIRYVTIE 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 33028 37570 + Carg24562-RA Car11g00006 155959

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00006 559 SMART AAA_5 370 511 IPR003593 -
Car11g00006 559 Pfam AAA lid domain 514 554 IPR041546 -
Car11g00006 559 Pfam Clp amino terminal domain, pathogenicity island component 144 196 IPR004176 -
Car11g00006 559 Pfam ATPase family associated with various cellular activities (AAA) 375 505 IPR003959 GO:0005524|GO:0016887
Car11g00006 559 Coils Coil 424 444 - -
Car11g00006 559 CDD AAA 353 506 - -
Car11g00006 559 ProSiteProfiles Clp repeat (R) domain profile. 130 230 IPR004176 -
Car11g00006 559 ProSitePatterns Chaperonins clpA/B signature 1. 465 477 IPR018368 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00006 K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC - csv:101207083 753.821
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00013 Car11g00006 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00006 Car-Chr11:33028 Car13g00109 Car-Chr13:788203 1.11E-105 dispersed
Car18g01103 Car-Chr18:11052683 Car11g00006 Car-Chr11:33028 1.57E-12 dispersed
Car10g00013 Car-Chr10:69082 Car11g00006 Car-Chr11:33028 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g29 . . Bda06g00709 Bda15g00698 . . . . . . Cma10g00018 Cma11g00007 Car10g00013 Car11g00006 . . . . . . . . . . Cla06g01783 Cam06g1977 Cec06g2027 Cco06g2035 Clacu06g1934 Cmu06g1875 Cre06g2687 . . Cone13ag0256 Cone19ag0241 . . . . . Blo15g00190 . . Bpe07g00907 . . . . Cmo10g00016 Cmo11g00006 . . . . . Cpe18g00938 . . . . . . . . . . . . . . Lsi06g01681 Csa01g00010 Chy02g02703 Cme02g02111
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002235 2 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 1 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00006 Car_Chr11 FPKM 9.546925 9.464107 8.58304 7.563359 19.072439 18.365685 18.888201 5.882364 5.920928 6.024908