Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00029 ATGGAGAACAACAATCAAGCCCAATCCTCCCCTTACCCTCCTCCTCCTCCTCCTCCTCAGGCACCCGTCCCGGCCCCTCACTTCCACCACCTCCTCCAGCAGCAGCAGCAGCAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGATTTTAAAAACCACCAGCTTCCTTTGGCTCGCATTAAGAAGATCATGAAAGCCGACGAGGACGTGCGTATGATCTCCGCCGAAGCGCCCATTTTGTTCGCCAAGGCCTGCGAGCTCTTCATTCTGGAACTCACTATTAGGTCATGGCTTCACGCGGAGGAGAATAAGAGGCGGACATTGCAGAAGAACGATATTGCGGCGGCCATCACGAGGACCGATATCTTTGATTTCTTAGTTGATATTGTGCCTAGGGATGAAATCAAGGACGAAGCTGGATTGGGAGGCATGGTCGGAGCCACTGCTAGTGGAGTGCCCTACTATTACCCCCCTATGGGTCAACCGGCAGGGGCTCCCGGGGGGATGATGATTGGGAGACCGGCAATGGATCCCATCGGAGTTTACGCTCAGCCGCCGTCACAGGCCTGGCAGTCGGCGTGGCAGCCCTCGGCGGAGGACGGTTCTTACGCCAGTGGAGGCAACAGCGGGCAGGGCAATCTTGATGGTCAGAGGTAG 675 56.0 MENNNQAQSSPYPPPPPPPQAPVPAPHFHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGAPGGMMIGRPAMDPIGVYAQPPSQAWQSAWQPSAEDGSYASGGNSGQGNLDGQR 224
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 135980 136654 + Carg24539-RA Car11g00029 155982
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00029 224 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 223 - -
Car11g00029 224 SUPERFAMILY Histone-fold 33 132 IPR009072 GO:0046982
Car11g00029 224 Gene3D Histone, subunit A 27 138 IPR009072 GO:0046982
Car11g00029 224 Pfam Core histone H2A/H2B/H3/H4 43 123 IPR007125 GO:0003677
Car11g00029 224 MobiDBLite consensus disorder prediction 191 224 - -
Car11g00029 224 MobiDBLite consensus disorder prediction 1 26 - -
Car11g00029 224 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 1 223 - -
Car11g00029 224 MobiDBLite consensus disorder prediction 188 224 - -
Car11g00029 224 MobiDBLite consensus disorder prediction 9 25 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00029 Car-Chr11:135980 Car19g00234 Car-Chr19:2355197 5.64E-69 dispersed
Car17g00562 Car-Chr17:5224210 Car11g00029 Car-Chr11:135980 6.11E-08 dispersed
Car20g00421 Car-Chr20:2362465 Car11g00029 Car-Chr11:135980 1.38E-08 dispersed
Car16g00529 Car-Chr16:3359685 Car11g00029 Car-Chr11:135980 2.04E-31 transposed
Car10g00047 Car-Chr10:201929 Car11g00029 Car-Chr11:135980 3.29E-156 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4216 PF00808 CBFD_NFYB_HMF 2.30E-17 CL0012 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00029 - - cmax:111500215 375.17