Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00031 ATGGCACCGCATGACATTCGCCGTCCTCACAAACGCCCCGCGATCTCCGACCAGCAGAAGCGGCGGGAGCTTTCTTTACAACGGCAACAGCAGAATCGTCGCGACGCTCAGCAACAAGCACGTTCCTTAGCCTCCACGCTCCTCTCCCTCTCTTCCACGTTCAACGAGCCTAGTACCTCTGAGCCGGTGTTGGAGGTTGAGCTAAATGAACTCGATTCCGAAACGGAATGCTCCCCGGTGCTTAGATCGCAGAGTGAATTTAACGAGCCTTCTCTGAAGGAGTTCGATGTTCGCCAGGCTTCGAAGCTCAAAGGTTCAGAGGCTCGTAAGTGGTTTTCGAGGCAACTGTTCCTTCCTGAATGGATGATAGATGTTCCTGATCGACTTAGCGAAGACTGGTACGTATTTGCAAGGCCTTCCGGGAAACGGTGCTTTGTTGTTTCTTCCAATGGCACAACTATCAGTAGGCTACGAAATGGATCAATTCTGCATCGTTTTCCTTCTGCTCTACCCAACGGAGCAAGGAGAAGAGATGCCTCTGGATCCGGTCAATCATATTCTATCCTGGATTGTATATTTCATGAAATGGATCAAACTTACTACGTCATTGATATGATTTGTTGGCGAGGATATTCTCTTTACGATTGCACAGCCGAGTTTCGGTTCTTCTGGCTCAATTCCAAGCTTGTTGAATCTGGTGCTTCTGAGCCACCTTCATACTATCACAAATATAAATTCAGCCTTGTTCCTGTATATACGTGCGATCAAAATGGTTTTTATGCTGCTTATACTGGAGCGGCACCTTATATCAAGGATGGCCTATTATTTTACAACAAGCATTCCCATTACCAGCCAGGAAATACACCACTTGCATTGGTCTGGAAGGATGAGAGTTGCAGTCGATATGTTATTGACACAGATAGTAATGGACAAGTCCCAAGCCAACAGCAGGTGGTTTTGGAGCTACAAGATGATGGAAAGGTGACTACATCAGATGATCCTCCAGTGGACTTTGGATGCTTAGATGGCAATTTTATCGAAAAGTCAGGGTTGTCTTCAGGTAATCTCTTGCGATTTGCAATCGGGGATGGTGGGCTGACCATTGTTGACGGGAGGATTCAGGGGGCAGATTTACAATATGTTGGCAAGGTCAATGGGGCTCGAGCCTTTGCAGATAGTTACTCCAAGGTTATGTTTCAATATGCGGCTCGCCATTCGCCTTTAAAAGTAGATGATCTATTAACGTCCATCAATTCATCAAATGATCACCGAGAAGATGGTGATACTGAAATGGATGGATAG 1302 46.31 MAPHDIRRPHKRPAISDQQKRRELSLQRQQQNRRDAQQQARSLASTLLSLSSTFNEPSTSEPVLEVELNELDSETECSPVLRSQSEFNEPSLKEFDVRQASKLKGSEARKWFSRQLFLPEWMIDVPDRLSEDWYVFARPSGKRCFVVSSNGTTISRLRNGSILHRFPSALPNGARRRDASGSGQSYSILDCIFHEMDQTYYVIDMICWRGYSLYDCTAEFRFFWLNSKLVESGASEPPSYYHKYKFSLVPVYTCDQNGFYAAYTGAAPYIKDGLLFYNKHSHYQPGNTPLALVWKDESCSRYVIDTDSNGQVPSQQQVVLELQDDGKVTTSDDPPVDFGCLDGNFIEKSGLSSGNLLRFAIGDGGLTIVDGRIQGADLQYVGKVNGARAFADSYSKVMFQYAARHSPLKVDDLLTSINSSNDHREDGDTEMDG 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 164847 170251 - Carg20169-RA Car11g00031 155984

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00031 433 Coils Coil 26 46 - -
Car11g00031 433 MobiDBLite consensus disorder prediction 1 42 - -
Car11g00031 433 MobiDBLite consensus disorder prediction 1 29 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00031 K13151 SNUPN, RNUT1; snurportin-1 - csv:101214543 739.184
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00052 Car-Chr10:234215 Car11g00031 Car-Chr11:164847 3.38E-47 transposed
Car10g00051 Car-Chr10:232324 Car11g00031 Car-Chr11:164847 7.12E-17 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g111 . . . . . . . . . . . Cma11g00034 . Car11g00031 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo10g00058 Cmo11g00036 . . . . . . . . . . . . . . . . . . . . . . . Cme02g02063
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011602 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00031 Car_Chr11 FPKM 10.540282 12.148348 71.826469 72.093384 43.358746 43.399536 40.480042 43.287647 42.827034 41.529785