Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00038 ATGACAAGCCCGATATCCGTGAGAGTCGAAGAAAAATCTTTAGCCCGCTATCTCCCTCCATTTCCCGCTCCGAGGCTCTGCAGCTACCATTTCGAGTTCACTCCGGAACCTCCCCAGCATATGCAATTGGAGTTTTTGGGCGGTTCTTCCGTCCTCAGGTCGCCACATTTGGGTCCTTACAGGCACACGATGGCAGCCTTTGGTGCTCTTTCACTATGTCCCTGCAGCCCTCTGCCACGCCCACGTACCATTTATTGTTACAGTGGTACTCCTAAAGTTTTAGGCAATAATGTCTCTAGAGTACACCGCAAAAGACCGGGAAGATTAGAAGGTGCTAGAAAAAGCATGGAAGATTCTGTTAAACGCAAGATGGAACAGTTTTATGAAGGTTCAGATGGTCCGCCCCTCCGTGTTCTTCCAATTGGCGGCCTTGTCCTGTCTGATCAGGTAATTCCAGCTTTGGATTCCCATACACCAATTTACGCTTCATCCTTTACAGTGGAGCTAATAAAAAAGCGTCTGAAGGAAAATGGGATTTTTGTTCCTTCTAGACTTAAGGTGTTTAAGATGAGAAAGAGATTCACAGCTGGGCCATTTGAAATAGAGCCAATTAGGGTTACCCATTCCATTCCTGATTGTTGTGGATTGGTTCTTCGATGTGCTGATGGTACAATTCTTCATACTGGAGACTGGAAGATTGATGAGTCCCCATTGGATGGTAAAGTCTTTGATCGAGAAACTTTGGAAGAATTATCAAAAGAAGGAGTTACTCTCATGATGAGTGACTCAACAAATGTACTATCTCCTGGAAGGACGATTAGTGAGTCTGTGGTGGCAGATGCTCTTTTAAGACGTATCTCTGCAGCTAAAGGAAGGGTCATCACGACTCAATTTGCTTCAAATATACACCGCCTTGGAAGTGTGAAAGCAGCCGCTGATTTAACTGGTAGAAAGTTGGTATTTGTTGGGATGTCTTTAAGGACATATCTGGAGGCAGCCTGGAAGGATGGAAAGGCACCAATTGACCCATCGACCTTGGTAAAAGTGGAGGACATTGAAGCCTATGCACCAAAAGATTTATTGATTGTCACAACTGGCTCACAAGCAGAACCACGTGCTGCCCTAAATCTTGCATCGTATGGAAGTAGTCACTCTCTCAAACTGAGCAAGGAAGATATGATTTTGTATTCGGCCAAGGTTATTCCTGGTAATGAATCTAGAGTGATGAAAATGTTGAACCGTATATCAGAGATTGGATCAAATATAATCATGGGCAAGAATGAGTTGCTGCACACATCTGGTCATGCATATCGTGGAGAATTGGAGGAAATACTACAAATTGTTAAACCGCAGCATTTTTTACCCATTCATGGAGAGCTTTTATTCCTTAAGGAGCATGAGCTGCTGGGCCGGTCGACAGGCATTCGACACACAACTGTGATTAAAAATGGAGAAATGCTTGGAGTATCTCATTTGAGAAACAGAAGAGTTTTATCCAATGGTTTCACCTCTCTCGGGAAGGAGAATTTACAGTTGAAGTATAGTGATGGTGATAAAGCATTTGGATCCTCATCTGAGCTCTTTGTTGACGAGAGACTAAAGATTGCAACAGATGGCATAATAGTGGTCAGTATGGAAATCTTGCGACCTCAAAGTATAGACGGTTTAAATGAGACTGGCATCAAAGGAAAACTAAGAATCACTACTCGATGCTTATGGCTCGACAAGGGGAAGCTTTTAGATGCACTTCACAAAGCCGCTCATGCAGCACTTTCAAGTTGCCCCGTAAATTGTCCTCTAGCTCACATGGAAAGAACTGTGTCTGAACTTTTGAAGAAGATGGTTAGAAAATACAGTGGTAAGAGGCCTGAAGTCATAGTCTTGGCTGTGGAGAACCCTGGAGGAGTTCTATCCGAACAGCTTGGTAGAAGGCTTTCAGGGAAGTCCGATACTAGATTCGGGATGTCAGCACTGAGAAAAGCAGTTGATGGACAGCCAACTAAGAGCCACTTAAACGGCATAAGACCAGATGGAAATGACGATTTGCATTCTGAGGACAACTCAAGTCAGGAGTCCCAAGGTTATTATATTGAACCTGGGAGCCTACTTCCTGAAGAAGACTACAATTCCTCAAACTCCAACTTGACAGAGACACAATCCTCGGATACCGAGGACATGGAAGATCTCTGGACACCGTTTATCACGCCATCCTCTCCTGTTAATGAATTGGTAAAGGAGAATGAGGGTTCTGTTGAACCATCAAAAAATACGCTGGAGATTTCAAACGGAGGTGAAGAAGGTAGTGATGAGGAGTCACTGAAAACATCAAATTCTTCGGAGAAGCCTTTGAAGCCTGTTAAAAGCAATAAATGGAAACCTGAGGAGATGAAGAGACTTATAAAATTACGTGGCCAATTGCATGCCAGGTTTCAAGTTGCCAAGGGACGAATGGCATTATGGGAAGAGATATCCACATGTATGTTGGGTGATGGAATGAATCGGAGTCCAGGACAGTGCAAATCTCTGTGGGCATCTCTGGTTCAGAAATATAAGCAGGATAGCAAACGTGAAAAGACAATCAAGAGAAGTTGGCCATACTTGGAGGAAATGGACGCCATATTGTCTGATTCAGAGGCAGTAGCATCAAAATAA 2652 43.7 MTSPISVRVEEKSLARYLPPFPAPRLCSYHFEFTPEPPQHMQLEFLGGSSVLRSPHLGPYRHTMAAFGALSLCPCSPLPRPRTIYCYSGTPKVLGNNVSRVHRKRPGRLEGARKSMEDSVKRKMEQFYEGSDGPPLRVLPIGGLVLSDQVIPALDSHTPIYASSFTVELIKKRLKENGIFVPSRLKVFKMRKRFTAGPFEIEPIRVTHSIPDCCGLVLRCADGTILHTGDWKIDESPLDGKVFDRETLEELSKEGVTLMMSDSTNVLSPGRTISESVVADALLRRISAAKGRVITTQFASNIHRLGSVKAAADLTGRKLVFVGMSLRTYLEAAWKDGKAPIDPSTLVKVEDIEAYAPKDLLIVTTGSQAEPRAALNLASYGSSHSLKLSKEDMILYSAKVIPGNESRVMKMLNRISEIGSNIIMGKNELLHTSGHAYRGELEEILQIVKPQHFLPIHGELLFLKEHELLGRSTGIRHTTVIKNGEMLGVSHLRNRRVLSNGFTSLGKENLQLKYSDGDKAFGSSSELFVDERLKIATDGIIVVSMEILRPQSIDGLNETGIKGKLRITTRCLWLDKGKLLDALHKAAHAALSSCPVNCPLAHMERTVSELLKKMVRKYSGKRPEVIVLAVENPGGVLSEQLGRRLSGKSDTRFGMSALRKAVDGQPTKSHLNGIRPDGNDDLHSEDNSSQESQGYYIEPGSLLPEEDYNSSNSNLTETQSSDTEDMEDLWTPFITPSSPVNELVKENEGSVEPSKNTLEISNGGEEGSDEESLKTSNSSEKPLKPVKSNKWKPEEMKRLIKLRGQLHARFQVAKGRMALWEEISTCMLGDGMNRSPGQCKSLWASLVQKYKQDSKREKTIKRSWPYLEEMDAILSDSEAVASK 883
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 192227 203000 - Carg20176-RA Car11g00038 155991

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00038 883 Pfam Zn-dependent metallo-hydrolase RNA specificity domain 427 467 IPR011108 -
Car11g00038 883 MobiDBLite consensus disorder prediction 705 720 - -
Car11g00038 883 ProSiteProfiles Myb-like domain profile. 783 847 IPR001005 -
Car11g00038 883 MobiDBLite consensus disorder prediction 734 763 - -
Car11g00038 883 Pfam Myb/SANT-like DNA-binding domain 789 873 IPR044822 -
Car11g00038 883 MobiDBLite consensus disorder prediction 662 789 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00038 - - - cpep:111780336 1358.97
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00058 Car11g00038 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00038 Car-Chr11:192227 Car15g01214 Car-Chr15:9473753 2.71E-11 dispersed
Car10g00058 Car-Chr10:255729 Car11g00038 Car-Chr11:192227 3.96E-54 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g135 . . . . . . . . . . Cma10g00071 Cma11g00042 Car10g00058 Car11g00038 Sed08g0040 . Cpe04g01607 Bhi02g00533 Tan09g2359 Cmetu02g0049 . Hepe09g0058 . . Cla06g01733 Cam06g1924 Cec06g1974 Cco06g1978 Clacu06g1880 Cmu06g1822 Cre06g2637 . . . . . . . . . . . . . . . . . Cmo10g00066 Cmo11g00043 . . . . . . . . . . . . . . . . . . . . Lsi06g01633 Csa01g00066 Chy02g02654 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006250 1 3 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 1 3 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4218 PF13837 Myb_DNA-bind_4 1.80E-16 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00038 Car_Chr11 FPKM 0.0 0.0 0.0 0.116088 0.0 0.0 0.0 0.0 0.120792 0.169685