Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00040 ATGGCGAAGCCAAATCGTGTAACCAATTCTTCTGTAGCCTCTGATTTCATCGACTTCTTGAACGCTTCCCCGACTGCTTTCCACGCCGTTGAGGAGGCAAAGAAGCGGCTGGTAGAAGTGGGATATGAACAACTCTCTGAGACAGAGGATTGGAAATTAGAAGCCGGCAAGAAGTACTTCTTCACCAGAAATCATTCCGCCATCATCGCTTTCGCGATCGGTAAAAAGTATGGTTCTCGATTTCATAATTGCAGTGGTTCCGATTTCATAATTTTCGATTTATACGTTGCTGGGAATGCATTTCATATTGTTGGTGCTCATACAGATAGCCCTTGTTTGAAATTGAAGCCTATAAGCAAGATTACGAAGGGTGGATTTCTGGAAGTTGGTGTTCAAATTTATGGGGGTGGGTTGTGGCACACATGGTTTGACCGGGATTTAACAGTTGCAGGAAGGGTGATTCTGAGGGATGAGAAAAATGGTTCTGTTTCATATGTTCCTCGACTTGTTCGAATTTTGGAGCCCATATTGAGAATCCCCACATTAGCAATTCACTTGGACAGGGATGCAGTTGCATTTGCGGTGAACACAGAGACCCAACTTCTCCCAATTTTGGCCACGACTATTAAGGGGGAATTGAATAAAGTTGTTTACAAAAATGATGCCCAAAATGGTGGAGAGTATACAGATCAGAAGTCAACTCCTAGTAGCTCAAAGCATCACTTGCTTCTGTTACAGATACTTGCGGAGCAACTTGGCTGTGAACCAGATGACATATTTGATTTTGACTTGCAAGTATGTGATGCTCAACCAAGTGCGATTGGTGGTGCCAAGAGGGAATTCATATTCTCTGGAAGGCTCGATAATTTATGCATGACATTTTGCTCTTTGAAGGCATTGATTGACAGTACGTCTTCTGAAAGTAGCCTTGAGAATGAGGCTGGTATCAGAATGGTGGCCCTGTTTGACAACGAGGAGGTTGGATCTAATTCAGCCCAGGGGGCTGGGTCTCCAGCAATGCATGATGCTTTATCACGAATCACCACTTCATTCAGCCCATTACCTTCGCTGGTTGAAAAAGCTATCCAGAAAAGTTTCCTGGTCTCTGCCGACATGGCGCATGCATTACACCCCAATTATATGGAAAAGTATGAAGAAAATCATCGGCCCAAGTTCCATGGAGGACTGGTCATCAAGATGAATGCAAATAATAAATACGCAACTAATGCAGTCACTGCAACCATATTCCGGGAGTTCGCTTTAAAACATAACCTTCCTGTCCAGGATTTTGTGGTCCGCAATGACATGGCTTGTGGTACCACCATTGGCCCCATCCTTGCAAGTGGCTTAGGCATACGAACAGTTGATGTGGGAGCACCGCAGCTATCGATGCACAGTATTCGAGAAGTTTGTGGTACAGACGATGTTGATTACTCGTATCAGCATTTCAAGGCTTATTATGAAGAGTTCTCCACTCCTTCCTTGGAGCCAACGCAAGCTGAGACAGTGAAGTGGAGCTCAGGAGTCGAGATCTCAGTCATGGCGGCAACGAATGAAGCAAAAAGTAAGAGCAATTCTGTTGTGGATGATCTTCTCCAGTTCTTAAACGCTTCGCCAACTGCTTTCCACGCCGTTGCTGAGGAAATTCTTCTCGGAAATTTGAGATATCGTCATTCTCTTCTTATTCGCCTCCTGAACTTCCCCTATTCGTTATTTCTGTTATTGAAGATAAGATCATACCGATTCGAGCTTGCCGTTTTTCCATATGTTCGGATTGCTCTAGACGAGGCAAAGAAGCGTCTGCGAAGTGTTGGATATGAACAAGTATCTGAAAGAGAGGACTGGAAATTAGAAGCTGGAAAGAAGTACTTCTTTACCAGAAACCATTCCACCATCGTTGCCTTCGCGATTGGTAAAAAATATGTTGCTGGGAATGGATTTCATATTGTTGGTGCTCATACCGACAGCCCTTGTTTAAAACTGAAGCCTGTGTCCAAGGTAACAAAGGGTGGTTATCTGGAAGTTGGCGTTCAAACATATGGGGGTGGATTGTGGCACACATGGTTTGATCGTGACTTAACAGTTGCAGGAAGGGTGATTATAAAGGAACAAAAAAATGGTTCTGTATCATATATTCATCGACTTGTTCGAGTTGAGGATCCCATAATGAGAATCCCCACACTAGCGATTCACTTGGACAGGGGCACGGATGGATTTAAGGTCAACACGCAGAGTCATCTTCTCCCAGTCTTGGCAACAAGTATTAAGGGGGAATTGAATAAAGTTGTTACCAAGAATGATGCACAAGACGATGGAGAGACAACAGAATCGAAGTCAAGTCCTAATAACTCAAATCATCACTCGCTTCTATTACAGCTACTTGCTGATCATCTTGGCTGTCAACCAGATGACATATGCGATTTTGAATTGCAAGCCTGTGACATGCAACCAAGTTTGGTTGGTGGTGCCCAGAAGGAATTCATTTTCTCTGGAAGGCTCGATAATTTATGCATGTCATTTTGCTCTTTGAAGGCGCTGATTGACAGTACATCTTCTCAAACAAGCCTTGAGCATGAGACTGGTGTCAGAATGGTGGCCTTGTTCGATCATGAGGAGGTTGGATCTAATTCAGCCCAGGGAGCTGGTTCTCCAGCAATGCTTAATGCGTTATCACGAATTACAAACTCCTTCAGCTCAGACTCTTCGCTTATTGAGAAAGCTATCCAGAGAAGTTTCCTGGTCTCAGCTGATATGGCGCATGCATTACACCCTAATTATATGGATAAGCATGAAGAAAATCATCAGCCCAAGTTGCACGGAGGGTTGGTCATTAAGAGCAATGCAAATCAACGATACGCAACCAATGCAATCACTTCGTTCATATTCAGGGAGTTGGCTGTGAATCATAACATTCCTGTTCAGGATTTTGTGGTTCGTAATGACATGGCTTGTGGTTCAACCATCGGCCCCATTCTTGCAAGCGGTGTAGGTATACGAACAGTAGATGTTGGAGCACCACAGCTATCAATGCACAGTATTCGGGAAATGTGTGCTACAGATGATGTCAACCACTCATATGAGCATTTCAAGGCCTATTACGAAGAGTTCTCTAATCTCGACCAGAAGATCACAGTCGATATGTAG 3144 43.92 MAKPNRVTNSSVASDFIDFLNASPTAFHAVEEAKKRLVEVGYEQLSETEDWKLEAGKKYFFTRNHSAIIAFAIGKKYGSRFHNCSGSDFIIFDLYVAGNAFHIVGAHTDSPCLKLKPISKITKGGFLEVGVQIYGGGLWHTWFDRDLTVAGRVILRDEKNGSVSYVPRLVRILEPILRIPTLAIHLDRDAVAFAVNTETQLLPILATTIKGELNKVVYKNDAQNGGEYTDQKSTPSSSKHHLLLLQILAEQLGCEPDDIFDFDLQVCDAQPSAIGGAKREFIFSGRLDNLCMTFCSLKALIDSTSSESSLENEAGIRMVALFDNEEVGSNSAQGAGSPAMHDALSRITTSFSPLPSLVEKAIQKSFLVSADMAHALHPNYMEKYEENHRPKFHGGLVIKMNANNKYATNAVTATIFREFALKHNLPVQDFVVRNDMACGTTIGPILASGLGIRTVDVGAPQLSMHSIREVCGTDDVDYSYQHFKAYYEEFSTPSLEPTQAETVKWSSGVEISVMAATNEAKSKSNSVVDDLLQFLNASPTAFHAVAEEILLGNLRYRHSLLIRLLNFPYSLFLLLKIRSYRFELAVFPYVRIALDEAKKRLRSVGYEQVSEREDWKLEAGKKYFFTRNHSTIVAFAIGKKYVAGNGFHIVGAHTDSPCLKLKPVSKVTKGGYLEVGVQTYGGGLWHTWFDRDLTVAGRVIIKEQKNGSVSYIHRLVRVEDPIMRIPTLAIHLDRGTDGFKVNTQSHLLPVLATSIKGELNKVVTKNDAQDDGETTESKSSPNNSNHHSLLLQLLADHLGCQPDDICDFELQACDMQPSLVGGAQKEFIFSGRLDNLCMSFCSLKALIDSTSSQTSLEHETGVRMVALFDHEEVGSNSAQGAGSPAMLNALSRITNSFSSDSSLIEKAIQRSFLVSADMAHALHPNYMDKHEENHQPKLHGGLVIKSNANQRYATNAITSFIFRELAVNHNIPVQDFVVRNDMACGSTIGPILASGVGIRTVDVGAPQLSMHSIREMCATDDVNHSYEHFKAYYEEFSNLDQKITVDM 1047
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 208662 218631 - Carg20178-RA Car11g00040 155993

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00040 1047 Pfam Aminopeptidase I zinc metalloprotease (M18) 594 1033 IPR001948 GO:0004177|GO:0006508|GO:0008270
Car11g00040 1047 Pfam Aminopeptidase I zinc metalloprotease (M18) 19 487 IPR001948 GO:0004177|GO:0006508|GO:0008270
Car11g00040 1047 MobiDBLite consensus disorder prediction 765 785 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00040 K01267 DNPEP; aspartyl aminopeptidase [EC:3.4.11.21] - csv:101216468 872.463
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00040 Car-Chr11:208662 Car18g00863 Car-Chr18:9633299 6.92E-27 dispersed
Car11g00040 Car-Chr11:208662 Car04g01493 Car-Chr4:8683902 6.44E-177 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g144 . Blo16g00264 . . . . . . . . . Cma11g00045 . Car11g00040 . . Cpe04g01605 Bhi02g00539 . . . Hepe09g0063 . . Cla06g01730 Cam06g1921 Cec06g1971 Cco06g1975 Clacu06g1877 Cmu06g1819 Cre06g2634 . Cone16ag0029 . . . . . . . . . . . Bpe15g00210 Bma03g01265 . . . Cmo11g00046 . . . . . . . . . . . . . . . . . . . . Lsi06g01628 Csa01g00070 Chy02g02650 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003516 0 2 1 1 1 2 1 2 2 2 1 2 1 1 1 2 2 2 1 2 2 1 2 2 1 2 2 4 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00040 Car_Chr11 FPKM 0.949141 0.0 0.0 0.0 0.730863 0.992689 1.715275 0.0 1.208429 1.752269