Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00042 ATGGCACCGACTGTTCCTATTGAGTTTGCTGGACAGAAGGAATCGAGAAAGTACTCACTTTCACAGGTAATGGGGAAATCGAGGAAATATTCCAAAGGTCTTTCTTTTGGTTTTGTTCCAGATTACCGACATGCTGTGGAAACTGTTGGCGAATCAGAAGGGTTAGGGAGCTCTGGACGAATGGATACTGGAATCTCATCTCTAGACGATCCACGGGCCTTCAAGAGGAAGCGTGTTAGTATTAATGCAAATGGTTATGATTGTTTCGGTGCTTCCCTTCAAGTTTTTTCTATATCATCGTTGTCTCGATCTGAAAGGAAAGGTTTAGAGATAAGGTTAAAGTTAGAACTTGAGCAGGTCCGAGTTCTGCAAAAGAAAGCTTCTGACGTTGGTTCGAGTTTGGCTGTTTCATCGTCGAGTAATATTCAGAGTTATAGTGATCAGCACAGGGGAGCTCCTCCAGAGACTTCTAATAGGTTGTCCGAGGTATCGGTTCCTCCTGCTAAAAAGCTAGTGCCCTCTGGGCGCAATGGCCCTTCAGCTGTAAGAAGCTCATCTGGGCGGTTTGAGTCGGTTAAACCAGCTGTTGTATCTTCTTCCTCGACAGCATTGTTATTGAAACAATGTGAACAGCTGCTGCCTCGGTTGATGTCGCATCAATTTGGTTGGGTTTTTAACACCCCAGTTGATGTGGTCAAGTTGAATATTCCAGATTATTTCACTGTTATAAAGCATCCAATGGATCTGGGCACTGTGAAGTCGAAGATTACTGCAGGAGAATACACACATCCATTGGATTTTGCTGCAGATGTTCGACTTACTTTTTCAAATGCGATGACTTACAACCCTCCTGGGAATGACGTCCATGTCATGGCTAAGACCCTAAGTAAATATTTTGAAGTTAGATGGAAAACTATAGAGAAGAAGCTCCCTGTAACAACTGAAGAACAGCGTCAAGTATCTTCAGCCACGATTGTTCATAAGGAAGCTGAAAGTACTCTGCCCGTGTCACGTTCAAAAAAGACAAAAGTCCCTACTAATAGCCCTGATATTCAGCCAAACAGTGTGTCAAAAATCATGACTGACCAGGAGAAGCATAAACTGAGTGTGGAGTTGGAGGCGTTGCTGGGAGAATTGCCTGAAAGCATCATTGATTTCCTAAAGGAGCACAGTTCTAATCCTCTAGCGGGTGAGGAGGAGATTGAAATTGATATTGATACTCTTAGTGATGATACCTTGTTTGCATTGAAGAAGAAATTGGACGACTATATAATGGAAAAGCAGAAACGCACAACGACTGAACCTTGTGTAGTGGAGCAGCTTCGCAATGAATCAGGATTGAGCAATTCATCAATGCCACCCTGTAGAGGAAATGGTCGGATTGATGACGATGTAGACATTGTTGGTGGAAGTGACCCTCCTGTTTCAAGCTATCCTCCAATAGAGATAGAGAAAGATACAGTCCATAGAGATAGTAAATGCAGTCGTTCCAGTAGCTCGAGTAGTGAATCAGGTTCTTCATCAAGTGATTCTGGCTCAGATAGTTTATCGGCGAGTGAATCTAATGCTGCTAAAGCTTTAGATAATGACGTGGCTCCAAAGGAAATTTTGTCTTCTGAAACAAATGTGGATCAGAAGCAATATGAAGTTGGTGATTTAGAAATTGGAAATTTTGAAGAAAATGGAATTGGTCTAGTTGAGCAATCTGCTCAGGGCAATACAAACACTAACGACACGGATAGCTACCAAGAGGAGGGGGAGGGTGCTCCATCTAAGAGGCAAGTCTCCCCTGACAGGCTATACCGTGCAGCTTTATTGAGAAACCGTTTTGCCGACACGATACTGAAAGCTCGAGAAAAGGCACTTGAAAAGGGTGACAAGCGGGATCCTGAAAAAGTGCGAATGGAGAGGGAGGAACTTGAAAGACAGAAAAGAAAAGAAAAAGCCCGGTTGCAAGCAGAGGCCAAAGCTGCAGAGGATGCTCACAGGAAGGCAGAAGCAGAAGCTGCGGCTGAAGCAAAGAAGAAAAGGGAGTTGGATAGAGAAGCTGCACGTCAGGCCTTACTTAAGATGGAGAGGACTGTTGATATTAATGAGAACAGTCAATTCATGGAGGATCTAGAAATGCTTAGGGCTTCGAACGACGAGCAGCTACCAAACTTCACAGAGAAGTCAAGCCCAGAATATTCCCAGAAAGGATATGGCAGTTTCAGGCTTAAAGGTAGTAATCCCTTGGAACAACTTGGCTTGTACATGAAGGTGGATGATGAAGAGGAAGAGGATGAAAGTGAACCACCACCACCCCAGAGTGTTAACAAGCCAGCAAATGATGTTGAAGACGGTGAAATCAATTAG 2355 43.74 MAPTVPIEFAGQKESRKYSLSQVMGKSRKYSKGLSFGFVPDYRHAVETVGESEGLGSSGRMDTGISSLDDPRAFKRKRVSINANGYDCFGASLQVFSISSLSRSERKGLEIRLKLELEQVRVLQKKASDVGSSLAVSSSSNIQSYSDQHRGAPPETSNRLSEVSVPPAKKLVPSGRNGPSAVRSSSGRFESVKPAVVSSSSTALLLKQCEQLLPRLMSHQFGWVFNTPVDVVKLNIPDYFTVIKHPMDLGTVKSKITAGEYTHPLDFAADVRLTFSNAMTYNPPGNDVHVMAKTLSKYFEVRWKTIEKKLPVTTEEQRQVSSATIVHKEAESTLPVSRSKKTKVPTNSPDIQPNSVSKIMTDQEKHKLSVELEALLGELPESIIDFLKEHSSNPLAGEEEIEIDIDTLSDDTLFALKKKLDDYIMEKQKRTTTEPCVVEQLRNESGLSNSSMPPCRGNGRIDDDVDIVGGSDPPVSSYPPIEIEKDTVHRDSKCSRSSSSSSESGSSSSDSGSDSLSASESNAAKALDNDVAPKEILSSETNVDQKQYEVGDLEIGNFEENGIGLVEQSAQGNTNTNDTDSYQEEGEGAPSKRQVSPDRLYRAALLRNRFADTILKAREKALEKGDKRDPEKVRMEREELERQKRKEKARLQAEAKAAEDAHRKAEAEAAAEAKKKRELDREAARQALLKMERTVDINENSQFMEDLEMLRASNDEQLPNFTEKSSPEYSQKGYGSFRLKGSNPLEQLGLYMKVDDEEEEDESEPPPPQSVNKPANDVEDGEIN 784
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 221395 227089 + Carg20180-RA Car11g00042 155995

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00042 784 MobiDBLite consensus disorder prediction 620 681 - -
Car11g00042 784 Pfam Bromodomain 209 293 IPR001487 GO:0005515
Car11g00042 784 MobiDBLite consensus disorder prediction 141 163 - -
Car11g00042 784 MobiDBLite consensus disorder prediction 331 355 - -
Car11g00042 784 Coils Coil 637 682 - -
Car11g00042 784 MobiDBLite consensus disorder prediction 337 355 - -
Car11g00042 784 MobiDBLite consensus disorder prediction 715 732 - -
Car11g00042 784 ProSiteProfiles NET domain profile. 350 431 IPR027353 -
Car11g00042 784 MobiDBLite consensus disorder prediction 141 186 - -
Car11g00042 784 MobiDBLite consensus disorder prediction 564 584 - -
Car11g00042 784 MobiDBLite consensus disorder prediction 442 597 - -
Car11g00042 784 MobiDBLite consensus disorder prediction 494 524 - -
Car11g00042 784 ProSiteProfiles Bromodomain profile. 217 289 IPR001487 GO:0005515
Car11g00042 784 MobiDBLite consensus disorder prediction 714 784 - -
Car11g00042 784 Pfam Bromodomain extra-terminal - transcription regulation 360 420 IPR027353 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00042 - - - csv:101217420 1150.19
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00063 Car11g00042 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00042 Car-Chr11:221395 Car04g00390 Car-Chr4:2212028 4.46E-51 dispersed
Car10g00063 Car-Chr10:286116 Car11g00042 Car-Chr11:221395 0 wgd
Car11g00042 Car-Chr11:221395 Car11g01325 Car-Chr11:10913021 0 wgd
Car11g00042 Car-Chr11:221395 Car14g00641 Car-Chr14:3575450 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g154 . . Bda06g00738 . . . . Bma12g01074 . . . Cma11g00049 Car10g00063 Car11g00042 . . Cpe04g01603 Bhi02g00543 . . . Hepe09g0065 . . Cla06g01728 Cam06g1918 Cec06g1968 Cco06g1972 Clacu06g1874 Cmu06g1816 Cre06g2631 . . Cone13ag0209 Cone19ag0196 . . . . . . . . Bpe07g00881 . . . . Cmo10g00071 Cmo11g00050 . . . . . . . . . . . . . . . . . . . . Lsi06g01625 Csa01g00073 Chy02g02647 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00042 Car_Chr11 FPKM 1.433914 1.231976 2.87058 3.370939 16.391239 15.579898 16.675579 5.410249 4.228431 4.667224