Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00052 ATGGGTGGGGTTACTTCTTCCATGGCTGCCAAATTCGCCTTCTTCCCTCCCAACCCACCCTCTTACAAGCTCCTCAAAGACCAACCCACTGGCCTTCTTCTCTTGGACCCTTTTCCCCACCGCGAAAATGTCGATGTCTGGAAGCTTCCCACTCGCAAAGGCACTGAGATCGTCGCTGTTTACATCCGCTACCCTATGGCTACTTCTACGCTTCTTTATTCCCATGGAAACGCCGCCGATGTTGGCCAGATGTACGAGCTTTTCATCGAGCTTAGCATCCATTTGCGCGTTAATCTTCTCGGGTACGATTATTCGGGATACGGGCAGTCTACTGGAAAGCCAAGCGAACACAATACTTATGCAGATATTGAAGCTGCATATAAGTGTCTTGAGGAGAAATATGGTGCTAAGCAAGAGGAAATAATCCTTTATGGTCAATCCGTGGGAAGTGGCCCAACTTTAGACCTTGCTGCACGATTGCCCCGACTACGAGCAGTCGTTCTGCATAGTCCTATACTATCGGGATTAAGAGTCATGTATCCAGTGAAGCGCACGTACTGGTTTGACATCTATAAGAACATTGATAAAATACCATATGTTAAGTGCCCTGTGCTGGTAATTCATGGAACATCTGACGACGTCGTTGATTTCTCTCACGGTAAACATCTCTGGGAGCTATGTCAAGAGAAATATGAACCCTTATGGCTCAAAGGGGGAAACCATTGTGATCTTGAACTCTTCCCTGAATACATCAGGCACCTCAAGAAATTCGTATCCACCGTTGAGAGATTGCCCTCGCGAAGGAACGGTTCAAGGAAAAGCACAGACCGAATGGAGCAATCAAGAAGGAGCACGGATTGTTTCGAGGCCCCGAGAAGGAGCTCAGACAGGCGAGAGAAACCAAGGAAAAGCGTAGATAGGCTAGACAAATCAAGAGCTCAAGGATACAAGTTTGACAGCATTGAGAAGCTAGAGAAGCTAAAGATCTCAATTGACCAAGTAGAGAGATCAAGGAGAAGTGTGGAATACTACGAGAAACCGAGGAGAAGCATCGACCAACAGTTGGAAAGAGGTCGAAAGAGTGTGGATTGGTTGGATAGAATGCGCGCCGGAGGGCAATCGACTATGATCATGTCCCCAAACGAGATAGCAAACAATGCGATCAGGCACGCTCTCAGGGCGCTGCGCCAACGCCATCTAGTTGAAGAAGGTGCGCATGCTCCCGCTTTTCTCGCTCTCTCTCGGCCCATCATATCGCAGAGTTCGGAATGGAAAGAGAAAGCAGAGAAGCTGGAGTTGGAGCTTCAGCAATGTTACAAGGCTCAATCGCGATTGTCTGAGCAACTTGTGGTGGAAGTGGCTGAGGGTCGAGCTTCTAAATCTTCGATTGAGGAGAAAGATGCGACGATTGAAAATCTGCAGCAGGAGTTAACTCGAGCCAGGGATGAATGCTCCCAGCTAAAGGCAGACTTAGAGATGAAAATTAAAGCCATGGAACTGGCTATATCTGAGAGCCAAGAACTTAAAGCACAGCTTGAAGCAATGACGATTAAAGCTAAGAATACAGAGGCTGAAAATAATATGTTGATTGACCGGTGGATGCTGCAAAAGATGAAGGATGCAGAACGCCTCAATGAGGCAAATGCACTCTATGAAGATATGATCGACCGACTCAAGGCTAGTGGTTTAGAGAAACTTGCTCAGCAACAGGTCGATGGTGTGGTCCGTCAGAGCGAAGAGGGTGCTGAATACTTCGTAGAATCCACCGTACCCTCTGTATGCAAGCATAGTATCCGTGCGCATGAAGGGGGCTGTGGTACTATTTTGTTTGAAAACAATTCAGGAAAGTTGATCAGTGGGGGGCAGGACCGAACCGTCAAAGTGTGGGATACAAATACTGGATCACTAAGTTCCACTTTACATGGGTGCCTTGGTTCTGTTCTTGATCTTGCAGTTACCCATGATAATAGATCTGTGATTGCAGCAAGCAGTTCAAACAACTTATATGCATGGGACGTTGGTTCTGGAAGGGTGCGCCATACGCTTACTGGTCACTCCGACAAAGTATGTGCTGTAGATGTAAGCAAAGTCTCGAGCCGACATGTTGTGAGTGCTGCTTATGATCGCACCATCAAAATCTGGGATTTACAGAAGGGTTACTGCACTAAGACCCTCATTTTCCCCAGCAATTGCAATGCAGTTCGGTTCAGCATGGATGGACAGACCATTTGTTCTGGGCATATGGATGGAAATCTTCGGTTGTGGGATATCCAAACAGGAAAATTGCTCAGCGAAGTTGCTGGACACTCCCTTGCTGTTACATCTCTTTCTTTGTCACGTAATGGCAATACGATATTGACTAGCGGGAGAGATAACTTGCATAATTTATTCGATATTCGGTCTTTGGAAGTCTGCGGGACATTACGGGCATCTGGGAATAGAGTAGCTTCCAATTGGAGCCGTTCTTGCATCAGCCCAGATGACAACCATGTTGCTGCTGGTTCCGCTGATGGATCTGTCCATGTCTGGTCAATATCAAAGCATGATATTGTGAGCACTCTGAAAGAGCACACTGCCTCGGTTCTGTGTTGTTCATGGAGTGGGCTTGGGAAACCCCTTGCGTCTGCGGACAGAAATGGAATTATATTTACATGGAACTGA 2661 47.01 MGGVTSSMAAKFAFFPPNPPSYKLLKDQPTGLLLLDPFPHRENVDVWKLPTRKGTEIVAVYIRYPMATSTLLYSHGNAADVGQMYELFIELSIHLRVNLLGYDYSGYGQSTGKPSEHNTYADIEAAYKCLEEKYGAKQEEIILYGQSVGSGPTLDLAARLPRLRAVVLHSPILSGLRVMYPVKRTYWFDIYKNIDKIPYVKCPVLVIHGTSDDVVDFSHGKHLWELCQEKYEPLWLKGGNHCDLELFPEYIRHLKKFVSTVERLPSRRNGSRKSTDRMEQSRRSTDCFEAPRRSSDRREKPRKSVDRLDKSRAQGYKFDSIEKLEKLKISIDQVERSRRSVEYYEKPRRSIDQQLERGRKSVDWLDRMRAGGQSTMIMSPNEIANNAIRHALRALRQRHLVEEGAHAPAFLALSRPIISQSSEWKEKAEKLELELQQCYKAQSRLSEQLVVEVAEGRASKSSIEEKDATIENLQQELTRARDECSQLKADLEMKIKAMELAISESQELKAQLEAMTIKAKNTEAENNMLIDRWMLQKMKDAERLNEANALYEDMIDRLKASGLEKLAQQQVDGVVRQSEEGAEYFVESTVPSVCKHSIRAHEGGCGTILFENNSGKLISGGQDRTVKVWDTNTGSLSSTLHGCLGSVLDLAVTHDNRSVIAASSSNNLYAWDVGSGRVRHTLTGHSDKVCAVDVSKVSSRHVVSAAYDRTIKIWDLQKGYCTKTLIFPSNCNAVRFSMDGQTICSGHMDGNLRLWDIQTGKLLSEVAGHSLAVTSLSLSRNGNTILTSGRDNLHNLFDIRSLEVCGTLRASGNRVASNWSRSCISPDDNHVAAGSADGSVHVWSISKHDIVSTLKEHTASVLCCSWSGLGKPLASADRNGIIFTWN 886
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 290299 296040 - Carg20190-RA Car11g00052 156005

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00052 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 766 801 IPR001680 GO:0005515
Car11g00052 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 825 853 IPR001680 GO:0005515
Car11g00052 886 Pfam Autophagy protein 16 (ATG16) 421 545 IPR013923 -
Car11g00052 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 854 886 IPR001680 GO:0005515
Car11g00052 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 598 635 - -
Car11g00052 886 ProSitePatterns Trp-Asp (WD) repeats signature. 702 716 IPR019775 -
Car11g00052 886 Coils Coil 541 561 - -
Car11g00052 886 Coils Coil 421 448 - -
Car11g00052 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 598 639 IPR001680 GO:0005515
Car11g00052 886 ProSitePatterns Trp-Asp (WD) repeats signature. 743 757 IPR019775 -
Car11g00052 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 854 886 - -
Car11g00052 886 Pfam WD domain, G-beta repeat 823 844 IPR001680 GO:0005515
Car11g00052 886 Pfam WD domain, G-beta repeat 594 630 IPR001680 GO:0005515
Car11g00052 886 Pfam WD domain, G-beta repeat 678 715 IPR001680 GO:0005515
Car11g00052 886 Pfam WD domain, G-beta repeat 721 756 IPR001680 GO:0005515
Car11g00052 886 MobiDBLite consensus disorder prediction 265 309 - -
Car11g00052 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 682 724 IPR001680 GO:0005515
Car11g00052 886 Pfam Serine aminopeptidase, S33 70 175 IPR022742 -
Car11g00052 886 Coils Coil 120 140 - -
Car11g00052 886 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 682 719 - -
Car11g00052 886 ProSitePatterns Trp-Asp (WD) repeats signature. 617 631 IPR019775 -
Car11g00052 886 ProSiteProfiles Trp-Asp (WD) repeats profile. 733 765 IPR001680 GO:0005515
Car11g00052 886 Coils Coil 463 532 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00052 K17890 ATG16L1; autophagy-related protein 16-1 - csv:101219308 925.235
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00071 Car11g00052 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00672 Car-Chr10:3467317 Car11g00052 Car-Chr11:290299 8.34E-06 dispersed
Car11g00052 Car-Chr11:290299 Car15g00221 Car-Chr15:1235100 9.56E-159 dispersed
Car18g00597 Car-Chr18:7068994 Car11g00052 Car-Chr11:290299 3.41E-28 dispersed
Car01g00374 Car-Chr1:2100314 Car11g00052 Car-Chr11:290299 1.81E-149 transposed
Car11g01356 Car-Chr11:11102328 Car11g00052 Car-Chr11:290299 9.35E-13 transposed
Car10g00071 Car-Chr10:319031 Car11g00052 Car-Chr11:290299 0 wgd
Car11g00052 Car-Chr11:290299 Car11g01336 Car-Chr11:10976086 0 wgd
Car11g00052 Car-Chr11:290299 Car14g00631 Car-Chr14:3523628 0 wgd
Car11g00052 Car-Chr11:290299 Car04g02568 Car-Chr4:20236531 9.32E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g872 . . . . Bpe12g00679 . . Bma12g01282 . . Cma10g00080 Cma11g00058 Car10g00071 Car11g00052 Sed08g0062 . . Bhi02g00575 Tan09g2328 Cmetu02g1969 . Hepe09g0082 . . . . . . . . . . Cone16ag0060 . . . . . . Blo13g00157 . . . Bpe07g01087 . . . . Cmo10g00080 Cmo11g00060 . . . . . Cpe18g00881 . . . . . . . . . . . . . . . Csa01g00088 Chy02g02632 Cme02g02031
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009836 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 3 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00052 Car_Chr11 FPKM 6.572917 8.867301 3.948627 3.789162 2.156764 2.389856 1.625142 2.907675 3.095416 2.798358