Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00056 ATGGCTTCTACTTCTGCCACTTCTATTTTGAAACCCTTATCCAAGGCAGACCCTTGCCTTCTATCCCTGCCCTCTGTATTCACCTACAGAGCCCCACAGTCCTTTCTCTCTTTCCCTTCCAAGTTCATCCCCTTTCACCTTTCTTCCTCCCATTCCTCTGTCTTTTTCCCCTCAAAGAAGAAACCCCATCTTTCTTCCCTCATTGCTTCTGTGGCCCAAGAAGACGACACCATCACCATTGACCAGAAACTCGCCGGCGACGAACAAGGTTGGGAGGGTGAAGGCGAAGAGGTTGGAGGAAGTGAGGCCGAAGGGGGGCTTTTGGAGTTGGGAGAGGACGACGAAGAAGAAGGGTCTTATGTTGAACCAAATGAAGATGCTAAGTTGTTCGTTGGGAATTTGCCTTATGACGTTGATAGTCAAAAGCTAGCAATGCTCTTTGAGAAGGTTGGAACTGTGGAGATTGCTGAGGTTGTTTACAACAGAGACACAGACCAGAGTCGTGGTTTTGGGTTTGTGACAATGAGTACTGTTGAAGAAGCTGAGAAAGCCGTGGATGCCTTAAACCGTTATGACTTATCAGGGAGGCTGTTGACGGTAAATAAGGCTGCCCCAAGAGGTTCTAGGCCAGAACCCACACCTCGAACATTTCAATCCGCTTACAGACTCTATGTAGGTAATCTTCCATGGGATGTTGATAATGCACGCTTGGAGCAGGTTTTCAGTGAACATGGCAAAGTAGTAGATGCTCGGGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGCTTTGGCTTTGTTACCATGGCTGATGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGACAGAGTATAGATGGAAGGGCAATCAGAGTAAATGTTGCAGAGGAAAGACCTAGGCGCAATTTCTGA 918 47.93 MASTSATSILKPLSKADPCLLSLPSVFTYRAPQSFLSFPSKFIPFHLSSSHSSVFFPSKKKPHLSSLIASVAQEDDTITIDQKLAGDEQGWEGEGEEVGGSEAEGGLLELGEDDEEEGSYVEPNEDAKLFVGNLPYDVDSQKLAMLFEKVGTVEIAEVVYNRDTDQSRGFGFVTMSTVEEAEKAVDALNRYDLSGRLLTVNKAAPRGSRPEPTPRTFQSAYRLYVGNLPWDVDNARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSIDGRAIRVNVAEERPRRNF 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 311655 313861 - Carg20194-RA Car11g00056 156009

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00056 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 127 205 IPR000504 GO:0003723
Car11g00056 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 299 IPR000504 GO:0003723
Car11g00056 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 293 IPR000504 GO:0003723
Car11g00056 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 198 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00056 - - - mcha:111006981 439.113
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00075 Car11g00056 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00056 Car-Chr11:311655 Car14g00190 Car-Chr14:896053 3.97E-52 dispersed
Car15g00442 Car-Chr15:2315827 Car11g00056 Car-Chr11:311655 8.92E-09 dispersed
Car18g00005 Car-Chr18:18632 Car11g00056 Car-Chr11:311655 8.76E-16 dispersed
Car08g00144 Car-Chr8:862001 Car11g00056 Car-Chr11:311655 2.81E-28 transposed
Car09g00508 Car-Chr9:2848180 Car11g00056 Car-Chr11:311655 1.68E-06 transposed
Car10g00075 Car-Chr10:335745 Car11g00056 Car-Chr11:311655 3.94E-114 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008467 1 1 2 1 1 1 2 1 1 0 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00056 Car_Chr11 FPKM 0.292019 0.986386 0.603978 0.819157 0.385386 0.0 0.364884 0.0 0.0 0.0