Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00057 ATGGGAGGGAAAAGTTCTAAGCAGGGAAGTTCAAGATACATTTCGTCTAGTCGGTCTAGCTCACAGCAGTGGAGTCATTTCGGTTATCCGGAGTCGGCATATGCTCAACCAAGAACCACGCCCCAGTATCAATTTGCTCCTCCGACTCCGGGGTATGGAGGAACTCAGGCCCCAGGGGCAAGAAAGAGGGTGGAGAGGAAATATTCAAGGATAGATGATCACTATAATAGTTTAGATCAGGTTACAAGAAGTGTTGATACTGAGCGTGGGCAGTTTAGCTCACAGGAAAAGAAAACCATTGAAGCAATTGTGAAAGCTAGTGCCAGTAGAGGGAAGGCAATCGACCGGGTTCCTCTTCCGCCTCCTCGTTACGGTCCTAGCTCCCAAAAGACCTCAAACACGAGCAGTTCTTGCACAACACCACCCTCAAATGGTGGAGTTGCTCCTGTCCGATCTGCGCCTCCTCTAAGTTCGGTTTCTGATGACCATACTTGTCCCATTTGCATCACCAATGCAAAGGATATGGCTTTTGGCTGTGGACATCAGACATGCTGTGAATGTGGACAGGATCTTGAGTCGTGCCCCATATGCCGCAGCTTTATCCAAACTAGGATAAAGCTTTATTAG 627 48.33 MGGKSSKQGSSRYISSSRSSSQQWSHFGYPESAYAQPRTTPQYQFAPPTPGYGGTQAPGARKRVERKYSRIDDHYNSLDQVTRSVDTERGQFSSQEKKTIEAIVKASASRGKAIDRVPLPPPRYGPSSQKTSNTSSSCTTPPSNGGVAPVRSAPPLSSVSDDHTCPICITNAKDMAFGCGHQTCCECGQDLESCPICRSFIQTRIKLY 208
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 314450 319062 - Carg20195-RA Car11g00057 156010

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00057 208 ProSiteProfiles Zinc finger RING-type profile. 165 198 IPR001841 -
Car11g00057 208 MobiDBLite consensus disorder prediction 1 158 - -
Car11g00057 208 MobiDBLite consensus disorder prediction 1 46 - -
Car11g00057 208 MobiDBLite consensus disorder prediction 126 146 - -
Car11g00057 208 Pfam Zinc finger, C3HC4 type (RING finger) 162 203 - -
Car11g00057 208 MobiDBLite consensus disorder prediction 60 79 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00057 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101221610 168.703
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00077 Car11g00057 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00057 Car-Chr11:314450 Car15g00350 Car-Chr15:1861696 8.90E-06 dispersed
Car10g00077 Car-Chr10:343517 Car11g00057 Car-Chr11:314450 6.84E-33 wgd
Car11g00057 Car-Chr11:314450 Car14g00620 Car-Chr14:3481239 7.21E-34 wgd
Car11g00057 Car-Chr11:314450 Car04g02572 Car-Chr4:20256572 5.92E-29 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g862 . . . . . . . . . . Cma10g00087 . Car10g00077 Car11g00057 . . Cpe04g01589 Bhi02g00592 . . . Hepe09g0092 . . Cla06g01707 Cam06g1895 Cec06g1944 Cco06g1948 Clacu06g1851 Cmu06g1792 Cre06g2607 . . Cone13ag0185 Cone19ag0178 . . . . . . . . . . . . . Cmo10g00088 . . . . . . . . . . . . . . . . . . . . . Lsi06g01600 Csa01g00097 Chy02g02625 Cme02g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00057 Car_Chr11 FPKM 0.110256 0.299785 1.522189 1.137322 0.497799 0.359213 0.223088 0.035662 0.116378 0.040871