Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00062 ATGGCGATGGATCCCAACCCCAAACGTTTCCCCATCCTTTCCTATGTCCTGGCCCGAATCCCCTCTCTCAGCCCTCGATCGCCGCGCACCGAAACCGACATCGAACAGCCTGCATCTCCGATGTCCCGCAACGCTCCGCATCATTCCTCCCATCCTTCCTCATCCTCCCCCCGAATCGTCGATCATATGCCTCATTTATCGGACCCTAAGTTATTGGCTTCTATGACCAGTGCTATATCTGATGTCGCTAAGACCCGATCCGTCCTCAAAAACCTTGGGGAGAGACCTGACCATGAGGCTGTCGATACTGCTAAGGCTAAGCTCGCTGATGTTGAATCCAAGTTGTCTACCAAGCTACAGGAAATCGTGCTTTCGTCTAGGCCGGCGGATGTGGAGTTGCTCGAGTGGAGGGCTCATCTTGCTCAGCAAGAGAATGAGTGCCGGGAGGCGGCGGATAAAGAGAAGCAGGTGTATAAGGCGATCGTTCAATTGGATGCGATGCACGAGGCGTATGAGAAGATGTTGAAGGAAGCTGAGGAGAGGTTGGTGAAGATTTACGAGTCGGCGGAGAGAAGGCTGCCGGAGGAACAACGCTTGGATCCAGTCAACGAGGAGGTCAATGAGGATGTTGCGAGGATTCTTCAGGAGGCAAATGAGAAGCAAATTGATCGAGTTAGTCTCTCCGGCCGACGTTTGCGGTTCTTGCCTGAACAATTTGGACGTATCCGGGGATTGGTCGTGCTTGATATTTCCTGCAATCAACTCAAGATTATCCCTGATTCGATATCCGGCTTAGAAAATCTAGAAGAGATGAATGCCTCATCCAATCTTTTGGGGTCATTGCCTGACACAATTGGCTTATTGCAAAAGCTGAAACTCCTGAATGTCTCTGGGAACAAGTTGCACGCCCTTCCTGACACAATATGCCAGTGCAGGTCATTGGTGGAGTTAGATGTGAGCTTCAACAGTCTAACGTACTTGCCAACAAATATTGGCCATGAACTGGTGAATTTGCAGAAGCTTGCTATCCAGTTGAACAAAATACGTTCACTTCCCTCTTCTGTTTGTGGAATGAGCTCTTTGCGTTACCTGGATGCTCATTTCAACGAGCTTCATGGCCTTCCTCAGGCAATTGGGAAATTGACTCAACTCGAGTATCTCAACCTAAGCAGTAACTTTACTGACCTTAATGAACTTCCACAGACCTTCGGTGATTTATCCAGCCTTAGGGAACTTGATCTTAGCAATAACCAGATTCACTCTCTACCCGATACATTTGGCCATCTTGAGAATTTAAAGAAACTAAACTTGGAGCAAAATCCTCTTGAAACTCCACCCATGGAAGTCGTAAACAAAGGACCGGATGCTGTGAGGACATTCATGTCCAAGAGGTGGCTTGAAATTCTTGAGGAGGAAGATAGCAAAAGAACTCTTGCAGTGGAAGAACAAGGACAGACTGGATGGCTGACTCGAAGCACTTCTTGGGTGAAAACTTACGTTTCTGGGGTTACAGAAACCGTGTCTGGAATTGTTGGATCTCCTAAAAATTACAACACACAGTTGCTTAATCTCGATGAAGCCCATTTGGTTTCAGAGTGTGAGAGGGATTTGAAGGCGTTGGATAATGGAGAGGGATGGGAGGAGGTGATGACTGAGATAAGGAAGCAGATGGGGCTGGCAGGTCCTCTGGTTTTGGTGAGCTTTTTGCAGTATAGTTTGCAGCTGATATCGATCATGTTCATTGGCCATCTTGGAGAGCTGCAACTCTCTGGTGCTTCAATGGCATTCTCTTTTGCTGGAGTCACTGGCTTTAGTCTCTTGCTTGAGCACAAGTTCGCTGGTTTTCAGAATCACCTATGGCTTCGGCAGTGTAGTGAGGTATAA 1884 47.82 MAMDPNPKRFPILSYVLARIPSLSPRSPRTETDIEQPASPMSRNAPHHSSHPSSSSPRIVDHMPHLSDPKLLASMTSAISDVAKTRSVLKNLGERPDHEAVDTAKAKLADVESKLSTKLQEIVLSSRPADVELLEWRAHLAQQENECREAADKEKQVYKAIVQLDAMHEAYEKMLKEAEERLVKIYESAERRLPEEQRLDPVNEEVNEDVARILQEANEKQIDRVSLSGRRLRFLPEQFGRIRGLVVLDISCNQLKIIPDSISGLENLEEMNASSNLLGSLPDTIGLLQKLKLLNVSGNKLHALPDTICQCRSLVELDVSFNSLTYLPTNIGHELVNLQKLAIQLNKIRSLPSSVCGMSSLRYLDAHFNELHGLPQAIGKLTQLEYLNLSSNFTDLNELPQTFGDLSSLRELDLSNNQIHSLPDTFGHLENLKKLNLEQNPLETPPMEVVNKGPDAVRTFMSKRWLEILEEEDSKRTLAVEEQGQTGWLTRSTSWVKTYVSGVTETVSGIVGSPKNYNTQLLNLDEAHLVSECERDLKALDNGEGWEEVMTEIRKQMGLAGPLVLVSFLQYSLQLISIMFIGHLGELQLSGASMAFSFAGVTGFSLLLEHKFAGFQNHLWLRQCSEV 627
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 338012 343894 - Carg20200-RA Car11g00062 156015

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00062 627 Coils Coil 161 188 - -
Car11g00062 627 Pfam MatE 562 604 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Car11g00062 627 MobiDBLite consensus disorder prediction 23 64 - -
Car11g00062 627 Pfam Leucine rich repeat 400 442 IPR001611 GO:0005515
Car11g00062 627 Pfam Leucine rich repeat 312 371 IPR001611 GO:0005515
Car11g00062 627 Pfam Leucine rich repeat 225 278 IPR001611 GO:0005515
Car11g00062 627 Coils Coil 203 223 - -
Car11g00062 627 MobiDBLite consensus disorder prediction 25 57 - -
Car11g00062 627 Coils Coil 101 121 - -
Car11g00062 627 Coils Coil 133 153 - -
Car11g00062 627 ProSiteProfiles Leucine-rich repeat profile. 408 429 IPR001611 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00062 - - - csv:101222309 860.907
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00082 Car11g00062 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00062 Car-Chr11:338012 Car18g00700 Car-Chr18:8221318 4.29E-147 dispersed
Car18g00907 Car-Chr18:9881114 Car11g00062 Car-Chr11:338012 4.13E-12 transposed
Car10g00082 Car-Chr10:369743 Car11g00062 Car-Chr11:338012 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006865 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00062 Car_Chr11 FPKM 18.023226 17.39389 58.81073 58.855198 254.375946 231.945419 253.926117 50.515377 50.34444 48.347115