Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Car11g00069 | ATGATTATTGATATTGATGTTCTTACTTTGATTTTGTTAAGGAAGATGGCATCATCAAGTTGTTACAACTCTCCATGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGCCAGATTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTCCACAAGATCTTTGGGGCAAGCAATGTCACAAAGCTGCTCAATGAGCTTCTGCCTCACCAAAGAGAGGATGCAGTGAATTCTCTTGCCTACGAGGCCGAGGCTCGAGTCCGAGACCCGGTCTACGGTTGCATTGGAGCCATCTCCTTCCTCCAAAGGCAAATCCATAGGCTCCAAAAGGAACTCGACGCTGCGAATGTCGACCTAATTCGGTACGCATGCAACGAGATCCCTGATGGCGGAGCGAGTCATGTGGTTCAGCCAATCCCCGACCTACGCCCGAGGGCTTTGGATCAGTATCATACAAGAATTCTTGGGAATGAAGGGTCATCAAGTGGATATTATAATCAACATCCTCCTGCTTTCCCTATGGGCTATCCACTTCCTTGGAATGAAAACTCTTCTGGAACTAACATCAATGAAGGAGGAAGGGATGACAATATTTGA | 615 | 46.02 | MIIDIDVLTLILLRKMASSSCYNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCIGAISFLQRQIHRLQKELDAANVDLIRYACNEIPDGGASHVVQPIPDLRPRALDQYHTRILGNEGSSSGYYNQHPPAFPMGYPLPWNENSSGTNINEGGRDDNI | 204 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 11 | 374319 | 374933 | + | Carg20207-RA | Car11g00069 | 156022 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Car11g00069 | 204 | Pfam | Lateral organ boundaries (LOB) domain | 25 | 121 | IPR004883 | - | |
| Car11g00069 | 204 | ProSiteProfiles | LOB domain profile. | 24 | 125 | IPR004883 | - | |
| Car11g00069 | 204 | Coils | Coil | 104 | 124 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Car11g00069 | Car13g00709 | CCT | |
| Car11g00069 | Car18g00177 | CCT | |
| Car11g00069 | Car13g00709 | ECH | |
| Car11g00069 | Car18g00177 | ECH | |
| Car10g00093 | Car11g00069 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Car05g00698 | Car-Chr5:4724611 | Car11g00069 | Car-Chr11:374319 | 1.66E-58 | dispersed | |
| Car11g00069 | Car-Chr11:374319 | Car02g00516 | Car-Chr2:4069449 | 2.78E-48 | dispersed | |
| Car10g00093 | Car-Chr10:418205 | Car11g00069 | Car-Chr11:374319 | 9.95E-118 | wgd | |
| Car11g00069 | Car-Chr11:374319 | Car11g01357 | Car-Chr11:11112461 | 1.72E-69 | wgd | |
| Car11g00069 | Car-Chr11:374319 | Car13g00709 | Car-Chr13:8335544 | 3.65E-63 | wgd | |
| Car11g00069 | Car-Chr11:374319 | Car14g00607 | Car-Chr14:3379792 | 4.37E-71 | wgd | |
| Car11g00069 | Car-Chr11:374319 | Car18g00177 | Car-Chr18:974033 | 7.70E-59 | wgd | |
| Car11g00069 | Car-Chr11:374319 | Car04g02589 | Car-Chr4:20334234 | 2.66E-63 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 4221 | PF03195 | LOB | 7.00E-42 | No_clan | Car | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Car11g00069 | - | - | cmos:111438177 | 405.986 |