Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00075 ATGGAGAACAAGGTGGAAGATTCAATTCGTGCGAAGATGGAGTCCCTTCGAATGGTTCGTGAAAAGGAAATTCCATTTCAGCTGGAAAAGATGGAGTCCTTCGCCGATTCATTTCGCAAGTCTCTGGAATCGATCTCTGCAAAGTCGCAAGAAAATGCCCTAAGTCAAGTGAAACTGGGAGAACTAAAGGCGAGGCTGAGGGAGGCGGAAGATGAATTGGTTAAAGCTCTAGCAGTGAAGACTCGCAAAGAGGCCAAACGGCTGGCAATCACAGACTCCCTTGCTGCTTCAAGATCTAGAATCGAGAAGCTCAGGAATACTTTACAAGATTGTAAAGCGAAGAGGGATAAATATTCTAACATTATATCTCAGCAATCCTTAGCTTTATCTTCTTCTGAACACAAGGAAACCCAAGAAAGCGATTGCAGAAGTGATTTACAAGAGGCTATTTCTTGGTACAATAGAGTTTTGGGTTTTCATATTGAAGGAGGACATGGGGTAACATTTTCTTTCAAGAAAATCATCAAGGACAATCCTGATAAAGAATATTCTTTTACCATTCGTCATGCAAATGATACTTATACATTGTTAGATTGTACCCCATCCTTGCGAGATATTAAAGAATTGATTCATGAATTGAATAAAACAAATGGTTTATTCAAGTTCGTTAAGGTCATGAGACGGAGGTTCCAAGAGGCTGCAGCAGAAGGAGTTGGAGCCGAAGCACTGTATCTGCATCAAGACTCAACGATGATATCTTTGTCAGCTCCTGGTTTGTCATCATCAACTGACGGAAGTGAATCTTCAACTCAAGAAATTGATAACCATGTTCAACCTGAGGAAACTAACAATCGTTCTAAGAAATTTTTACCTGGAAATAAACCAGGTATCCAATCCCCTGGATCTGCCTTTTCTTTGCGTCGATCTCCTCGTTTTCAGGATGACGATTTTGGAGGCGACTTCACTGGAGCGCACAACAATAGGCATTCAGGAAATAAGAGAGGTTTTGGCGATCTCGAAGATGAAGAGGATGACTTATTTGGTTCCAAAAAGGCTAACGCTAAAGTCGAAGAAACTGCTCCAGGTGTAGCGACAGGAATGATTCTGTCACTTCGTGAGAGTCTTAAAAGCTATGAGGATACACTCACAACATGCCGGACAGAGCTTGAAATTGCCAAGTCTGAGATTCAGAAGTGGATTTCTTCATTTCAGAATGAGAATTTCATTCCTGCTGGTGCTTCCCCTGAACCTAAGTTTGTGATCAGCTTTCTGCAATCCCTGAAGTTCTCGGAGGAGTCTCTAAGAGACCAGCTAGAAAAGGCAAAGAAGAAGGAAGCCGCTTTTATCGTTACATTTGCAAAACGAGAGCAGGAGATTGCAGAGTTGAAGGCAAGCTGCAGTCCGGGACTTGAAAGCACAATTGAAGCCACCATCCATGCAGGTACTAATGACGCTTTAATTTCGGCTAGAAGATTATTGATAGATCCTGCAATACATGAAGAGTTTACTCGTCTGAAGAGTTTGGTTGAGGAGAAAGACAAAAAGGTTAAGGAGCTGCAAGATAACATTGCCGCAGTAAGTTTTACTCCATCAAGCAAGATGGGTAAAATGCTGATGGCTAAATGTAGGACTCTGCAAGAGGAAAATGAAGAGATAGGAAATCAAGCTGCTGAAGGGAAGATGCATGAGTTAGGAATAAAGCTCGCGTTGCAGAAATCTCAAAATACGGAACTTAGAAATCAGTACGAAGCCTTACAGAAACATATGGAGGGGCTGACAAATGACGTTGAAAGGTCAAACGAATTGGCTATCGTGTTGCAAGAGAAGCTTGCAGAGAAGGATCGGGAGCTTCAAAGCTTCAAGGAAGCTTTACAGCAGCCGAAGAGTCCAACGGTCGAGAATAAAGTTGATTCACCCCTTGCCGAGAAGCCGCCCACAGATGAGGTGGTTATTTCCGGCGATGCTGAAAGCTGA 1974 42.65 MENKVEDSIRAKMESLRMVREKEIPFQLEKMESFADSFRKSLESISAKSQENALSQVKLGELKARLREAEDELVKALAVKTRKEAKRLAITDSLAASRSRIEKLRNTLQDCKAKRDKYSNIISQQSLALSSSEHKETQESDCRSDLQEAISWYNRVLGFHIEGGHGVTFSFKKIIKDNPDKEYSFTIRHANDTYTLLDCTPSLRDIKELIHELNKTNGLFKFVKVMRRRFQEAAAEGVGAEALYLHQDSTMISLSAPGLSSSTDGSESSTQEIDNHVQPEETNNRSKKFLPGNKPGIQSPGSAFSLRRSPRFQDDDFGGDFTGAHNNRHSGNKRGFGDLEDEEDDLFGSKKANAKVEETAPGVATGMILSLRESLKSYEDTLTTCRTELEIAKSEIQKWISSFQNENFIPAGASPEPKFVISFLQSLKFSEESLRDQLEKAKKKEAAFIVTFAKREQEIAELKASCSPGLESTIEATIHAGTNDALISARRLLIDPAIHEEFTRLKSLVEEKDKKVKELQDNIAAVSFTPSSKMGKMLMAKCRTLQEENEEIGNQAAEGKMHELGIKLALQKSQNTELRNQYEALQKHMEGLTNDVERSNELAIVLQEKLAEKDRELQSFKEALQQPKSPTVENKVDSPLAEKPPTDEVVISGDAES 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 394772 402898 - Carg20213-RA Car11g00075 156028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00075 657 Coils Coil 375 395 - -
Car11g00075 657 Coils Coil 94 121 - -
Car11g00075 657 MobiDBLite consensus disorder prediction 255 277 - -
Car11g00075 657 Coils Coil 502 522 - -
Car11g00075 657 Pfam Chromosome segregation protein Spc25 163 231 IPR013255 GO:0007059|GO:0031262
Car11g00075 657 Coils Coil 424 444 - -
Car11g00075 657 Pfam WTAP/Mum2p family 440 601 IPR033757 GO:0000381|GO:0005634|GO:0080009
Car11g00075 657 Coils Coil 568 623 - -
Car11g00075 657 MobiDBLite consensus disorder prediction 621 657 - -
Car11g00075 657 MobiDBLite consensus disorder prediction 255 339 - -
Car11g00075 657 Coils Coil 52 86 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00075 K22824 WTAP; pre-mRNA-splicing regulator WTAP - csv:101204933 509.605
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00099 Car11g00075 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00101 Car-Chr10:459557 Car11g00075 Car-Chr11:394772 2.84E-155 transposed
Car10g00099 Car-Chr10:443840 Car11g00075 Car-Chr11:394772 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g796 . . Bda06g00611 . . . . Bma12g01046 . . Cma10g00110 Cma11g00082 Car10g00099 Car11g00075 Sed08g0092 . Cpe04g01570 Bhi02g00492 Tan09g2284 Cmetu02g1221 . Hepe09g0221 . . Cla06g01683 Cam06g1870 Cec06g1919 Cco06g1924 Clacu06g1825 Cmu06g1768 Cre06g2584 . . Cone13ag0158 Cone19ag0157 . . . . . Blo15g00260 . . Bpe07g00852 . . . . Cmo10g00114 Cmo11g00082 . . . . . Cpe18g00855 . . . . . . . . . . . . . . Lsi06g01575 Csa01g00127 . Cme02g01996
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008893 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00075 Car_Chr11 FPKM 16.238878 16.749069 22.827341 20.77828 13.493241 10.572047 11.899802 49.854355 48.947414 51.816143