Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00076 ATGCCTGTAAATTCATGGACCATCTCTTCATTTATCCTAATCCTATGCTTTTGTACTGTTTCCGCCATTAATGAACAGGGCCAAGCTCTGCTCTCTTGGAAGCTAAGTTTCAAGGGATCCAACAGGGTGCTAAGTAATTGGGACCCTAACAATGAAACTCCATGTGGGTGGTTTGGAATCACTTGCAACAAGAACAGACAAGTAGTGGAAGTAGTTTTGAGGAATGTGAACTTACCCGGTGAGCTTCCATGGAATTTCTCTTCGTTCTTGTCGTTGAACAAGCTCGTCTTGTCGGGAGCCAATCTCACCGGCTCTATTCCTAAACAGATCGGTGCTCTCAGCCAGTTGAGGACCTTGGAACTCAGTGACAATGGATTGACTGGAGAAATTCCTAGTGAAATATGCGCTTTGATGAATCTTGAACAGCTTTACCTTAATTCGAATGGTCTTGAAGGATCAATCCCTGCAGGGATCGGGAATCTCACGAACTTGAAGGAGCTGATTCTCTATGATAATCAATTGAGCGGTGAAATTCCGGTTAGTATAGGGAATTTGAGGCGGATTGAAGTGATTAGAGCTGGGGGGAACAAGAACTTACTTGGCTCTGTACCGGAAGAAATTGGTAACTGCAGCAATTTGGTGATTCTTGGGCTAGCTGAAACCAGCATCTCCGGCTTTCTTCCGGCCAGTCTTGGCTTTCTCAAGAAGCTTCAGACGTTGGCAATCTATACTACTCTTCTCTCCGGTCAGATTCCTGATGAACTTGGCGACTGCACTGAGCTTCAAAATCTCTATCTCTACCAGAACTCGCTCTCTGGTTCGATTCCGATCTCATTGGGAAGGTTACGGAATCTTCAAAGTCTGCTTCTATGGCAGAACAATTTGGTCGGCGTTATACCGCCGGAGTTAGGTAGGTGTGACCAGTTAACAGTCATCGACGTTTCGATTAATTCTCTGACGGGAAGAATTCCTTCAACATTTGAGAATTTAACAATGCTTGAAGAATTGCTGTTGAGTTCAAATCAATTAACAGGTGAGATTCCGAAGGAAATCGCGAAATGTTCGAGAATCACTCACATTGAGCTTGATTATAATCAGCTCACTGGTACGATTCCCTCTGAATTGGGGAATCTCGCCAATTTGACATTGCTGTTCTTGTGGCAAAACAAGCTCGAGGGAAGTATTCCATCCACCATTTCCAATTGTCGCAATCTCGAGGCCTTGGATCTATCACTGAATGCCTTGACTGGTTCAATTCCGACGGGAATATTTCAGTTGAAGAAGCTTTCCAAGCTGTTGCTTCTCTCCAATAATCTCTCCGGCGGGATCCCGCCGGCGATTGGTAACTGCTCGTCTCTATCTCGGTTCCGAGCGAATAACAACAAGCTCGCGGGGGAAATTCCGCCGGAGATTGGGAATTTGAAGAACTTGATTTTCTTGGACCTCGGAAACAATCGCCTCACTGGAGCGTTGCCTCCGGAGATTTCTGGATGCCGGAATTTGACATTCATTGATTTGCATTCTAATTCTTTAACGAAATTTCTTCCAGAAGAACTCAACCAGCTTTCTTTGCTCCAGTTCGTTGATCTTTCAAATAACCTAATCGAAGGGGCGCCGATTCCGAGTTTTGGATCTTTCAACTCGCTCACGAAACTCGTTCTCTCAAACAACCGCTTCTCGGGGCCTATTCCGACGGAAATCGGTTCCTGCTTGAAATTACAGTTACTGGATTTAAGTTGCAATCAACTCTCCGGGAACATTCCACCGAGCTTAGGCAAGATTCCTTCACTCGAAATCGGTCTCAATCTGAGCTTAAACCAACTAACCGGCAAGATTCCGCCGGAGTTTGCAAATCTAGACATGCTCGGGTCATTGGACCTCTCTTACAATCAACTCTCAGGCGACCTCCACATTCTCGCAGAACTGCAAAATCTCGTGGTTCTCAATGTATCTCACAACAATCTCTCAGGACGCGTACCTGAGACGCCATTCTTCGCGCAGCTCCCTTTGAGCGTTCTCTCCGGGAACCCGGAGTTATGCTTCGCCGGCGAGAAGTGCTACGCCGATGGCCATGGCAGCGGCGCTCCCCACACGCTAGCGGCTCGAGTGGCCATGATTGTATTGCTGTGCACGGCATGCGTACTGCTACTAGCGGCAGTTTATATCGTTCTCAAAGATAGACATTCATGTCGGGGATACTTCAATGGGTCCCGCGGCGAAGATTCAGACAACGCCTTTGACAGCGATTTGGAGCTTGGCTCTGGCTGGGAAGTGACACTATACCAGAAGCTCGATCTTCCGATCTCCGAGGTAATCAAATGCTTAACGCCGGCTAATGTCATCGGCCGCGGCAAGACCGGCGTCGTGTACAGAGCCTGCATCTCATCAGGTCTAACAATCGCTGTGAAGCGATTCCGATCATCGGAAGCGTTCTCAGCGGCGGCGTTTTCATCCGAAATCGCAACATTGGCGAGGATCCGACATCGGAACATCGTCCGATTGCTAGGGTGGGGGGCGAATCGGAGGACGAAATTGTTGTTCTACGACTACTTGCCGAATGGGAATTTGGGTGCGTTGCTACACGAGGGGAATGGGCGCGTGGGGCTGGACTGGGAGAGTAGATTTAAGATAGCGTTGGGTGTGGCGGAGGGATTGGCTTATTTGCACCACGACTGCGTGCCGGCAATATTGCACCGGGACGTGAAGGCTCACAATATTCTGTTGGGGGATTGCTACGAAGCGTGTTTGGCGGACTTTGGGCTCGCTCGGTTGGTTGAAGATGGTCCGAGCGGTTCGTCTTCAACGAACCCTCAGTTTGCTGGGTCTTACGGTTATTTTGCACCTGAATATGGATGCATGCTGAGGATCACAGATAAGAGTGACGTGTATAGCTATGGCGTCGTTTTGCTGGAGATAATAACGGGCAAAAAGCCTGTAGACTCCTCATTCGCAGAAGGCCAACACGTGATTCAATGGGTGAGAGACCATTTAAAGAAGAAGAAGAATCCAATTTCAATACTAGATCCGAAACTTCAAGGCCGACCCGACCCGATAATCCAAGAGATCTTGCAAGCATTAGGAATCTCTTTGCTTTGCACAAGTGACTGTGCTGAAGATCGACCGACAATGAAAGACGTGACGGCTCTTTTACGTGAGATCCGACAAGACCAACTATCGACAACAGCAGATGCCGTTGACAAGCCGCCACAAAAGAATAGCAACACGACAAGCTTGGACACAAAGACATCGATTTTATCCTCATCTTCTATGGCGAATCATTTACCTTTTGCACTACCCATTCAAGAGTCGTCACATTGCTCTTATGCTTCATTGTCCTCGTTGGGTGCATATTTTTCGCGCAACCAGTGA 3369 47.82 MPVNSWTISSFILILCFCTVSAINEQGQALLSWKLSFKGSNRVLSNWDPNNETPCGWFGITCNKNRQVVEVVLRNVNLPGELPWNFSSFLSLNKLVLSGANLTGSIPKQIGALSQLRTLELSDNGLTGEIPSEICALMNLEQLYLNSNGLEGSIPAGIGNLTNLKELILYDNQLSGEIPVSIGNLRRIEVIRAGGNKNLLGSVPEEIGNCSNLVILGLAETSISGFLPASLGFLKKLQTLAIYTTLLSGQIPDELGDCTELQNLYLYQNSLSGSIPISLGRLRNLQSLLLWQNNLVGVIPPELGRCDQLTVIDVSINSLTGRIPSTFENLTMLEELLLSSNQLTGEIPKEIAKCSRITHIELDYNQLTGTIPSELGNLANLTLLFLWQNKLEGSIPSTISNCRNLEALDLSLNALTGSIPTGIFQLKKLSKLLLLSNNLSGGIPPAIGNCSSLSRFRANNNKLAGEIPPEIGNLKNLIFLDLGNNRLTGALPPEISGCRNLTFIDLHSNSLTKFLPEELNQLSLLQFVDLSNNLIEGAPIPSFGSFNSLTKLVLSNNRFSGPIPTEIGSCLKLQLLDLSCNQLSGNIPPSLGKIPSLEIGLNLSLNQLTGKIPPEFANLDMLGSLDLSYNQLSGDLHILAELQNLVVLNVSHNNLSGRVPETPFFAQLPLSVLSGNPELCFAGEKCYADGHGSGAPHTLAARVAMIVLLCTACVLLLAAVYIVLKDRHSCRGYFNGSRGEDSDNAFDSDLELGSGWEVTLYQKLDLPISEVIKCLTPANVIGRGKTGVVYRACISSGLTIAVKRFRSSEAFSAAAFSSEIATLARIRHRNIVRLLGWGANRRTKLLFYDYLPNGNLGALLHEGNGRVGLDWESRFKIALGVAEGLAYLHHDCVPAILHRDVKAHNILLGDCYEACLADFGLARLVEDGPSGSSSTNPQFAGSYGYFAPEYGCMLRITDKSDVYSYGVVLLEIITGKKPVDSSFAEGQHVIQWVRDHLKKKKNPISILDPKLQGRPDPIIQEILQALGISLLCTSDCAEDRPTMKDVTALLREIRQDQLSTTADAVDKPPQKNSNTTSLDTKTSILSSSSMANHLPFALPIQESSHCSYASLSSLGAYFSRNQ 1122
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 405604 409095 + Carg20214-RA Car11g00076 156029
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00076 1122 ProSitePatterns Protein kinases ATP-binding region signature. 781 803 IPR017441 GO:0005524
Car11g00076 1122 ProSiteProfiles Protein kinase domain profile. 775 1050 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car11g00076 1122 Coils Coil 1120 1122 - -
Car11g00076 1122 Pfam Leucine rich repeat N-terminal domain 24 63 IPR013210 -
Car11g00076 1122 Pfam Protein kinase domain 779 988 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car11g00076 1122 Pfam Leucine rich repeat 380 439 IPR001611 GO:0005515
Car11g00076 1122 Pfam Leucine rich repeat 308 367 IPR001611 GO:0005515
Car11g00076 1122 MobiDBLite consensus disorder prediction 1060 1080 - -
Car11g00076 1122 ProSitePatterns Serine/Threonine protein kinases active-site signature. 896 908 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car08g00911 Car-Chr8:6127187 Car11g00076 Car-Chr11:405604 0 dispersed
Car11g00076 Car-Chr11:405604 Car17g00104 Car-Chr17:620658 0 dispersed
Car17g00105 Car-Chr17:653769 Car11g00076 Car-Chr11:405604 0 dispersed
Car09g00936 Car-Chr9:5757751 Car11g00076 Car-Chr11:405604 0 transposed
Car10g00102 Car-Chr10:465567 Car11g00076 Car-Chr11:405604 3.00E-36 wgd
Car11g00076 Car-Chr11:405604 Car18g00173 Car-Chr18:957895 7.99E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89155 PF00069 Pkinase 6.30E-38 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00076 - - csv:101206847 1865.89