Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00077 ATGGCAGACCCAACAGGTTCATCAGCTTCAGATAAGGCTCATGCATCCTCTCATTCTTCATCGGACCAGCAAAACACTAAACGGGATTTTTCCACTGCAATTTTGGAACGCAAGAAGTCTCCGAATCGTTTAGTTGTTGATGAGGCTATCAATGATGATAACTCTGTGGTTTCTTTGCATCCTGTTACCATGGAAAAGCTGCAGTTCTTTAGAGGAGATACTATTTTATTGAAGGGGAAGAAGCGGAGAGATACAGTGTGCGTTGTTCTTTCCGATGAGCAATGTGAAGAGCCAAAAATCAGAATGAATAAAATTGTACGAGCCAATCTCAGAGTTCGTCTTGGAGATGTCGTATCTGTCCATCAGTGTCCAGATGTGAAGTACGGAAAGCGGGTTCACATCCTCCCTGTTGATGATACAATCGAGGGTGTTACTGGCAACCTATTTGATGCATATTTGAAACCTTATTTCTTGGAAGCATATCGACCCGTTAGGAAGGGTGACCTGTTCTTAGTCAGGGGTGGAATGAGAAGTGTTGAGTTCAAGGTCATAGAGACAGACCCTGGTGAATACTGCGTTGTTGCACCCGATACCGAGATCTTCTGTGAGGGAGAGCCCATCAAACGTGAGGATGAGGAGAGATTAAATGAAGTCGGATATGATGATGTTGGAGGAGTTAGGAAGCAAATGGCTCAGATCCGTGAATTAGTGGAATTACCACTTAGACATCCGCAACTTTTCAAATCGATTGGCGTAAAGCCTCCGAAAGGGATATTGTTATATGGGCCTCCTGGATCTGGAAAAACTCTTATAGCCAGAGCTGTTGCTAATGAGACGGGTGCATTTTTCTTTCTGATTAATGGTCCAGAAATAATGTCTAAGTTAGCTGGTGAGAGTGAAAGCAATCTGAGGAAGGCGTTTGAGGAAGCTGAAAAGAATGCCCCTTCAATTATATTTATTGATGAACTTGATTCCATTGCTCCAAAGAGGGAGAAAACACATGGAGAAGTGGAAAGGCGTATCGTATCCCAACTTCTTACCTTGATGGATGGCCTCAAAACTCGAGCACATGTTATTGTTATCGGAGCAACGAACAGACCCAACAGCATTGACCCTGCTTTGAGGAGATTCGGAAGATTTGATCGAGAGATTGATATTGGTGTTCCTGATGAAGTAGGACGATTGGAAGTCCTTAGGATCCATACAAAGAACATGAAACTTGCCGAGGATGTGGATCTTGAAAGAGTTGCACGGGATACTCATGGTTATGTCGGTGCTGATCTCGCCGCTCTTTGTACTGAAGCAGCACTCCAGTGTATTCGCGAGAAAATGGATGTCATCGACTTGGAAGATGAAACAATTGACGCTGAGGTTTTGAATTCCATGGCTGTAACTAATGAACATTTCCAAACTGCTTTAGGGTCTTCAAATCCTTCGGCATTGCGGGAAACTGTCGTGGAGGTTCCGAATGTTTCGTGGGATGATATCGGTGGGTTGGAAAATGTTAAAAGAGAGCTGCAGGAGACTGTCCAATATCCAGTGGAGCATCCTGAGAAGTTTGAAAAATTTGGCATGTCACCATCTAAAGGTGTCCTCTTTTATGGGCCCCCGGGCTGTGGTAAGACGCTGCTGGCTAAGGCAATTGCCAATGAATGTCAGGCCAACTTTATAAGTGTGAAAGGACCTGAGTTACTGACAATGTGGTTCGGTGAAAGTGAGGCAAATGTGAGAGAGATATTTGACAAGGCTCGTCAGTCGGCTCCTTGTGTACTATTTTTCGATGAACTCGATTCTATCGCAACTCAGCGTGGTAGTTCTGTTGGGGATGCTGGTGGTGCAGCAGATAGAGTCTTGAACCAACTTCTTACAGAAATGGATGGCATGACTGCGAAGAAGACTGTGTTTATAATTGGGGCGACAAACAGGCCAGACATTATAGACCCGGCGCTGCTCAGGCCGGGACGTCTGGACCAACTAATATACATCCCGCTCCCGGACGAATCTTCACGTCTTCAAATTTTCAAAGCATGTCTCCGAAAGTCGCCAGTGTCAAAAGATGTCAATCTATCAGCTCTTTCACGGTACACCCATGGCTTTAGTGGAGCTGATATCACTGAAATATGTCAGCGTGCCTGCAAATATGCCATTAGAGAAAATATCGAGAAGGATCTTGAGAGGGAGAGAAAGATAAGAGAAAACCCAGAAGCCATGGAGGAAGACGACATCGACGAAGTCTCAGAGATAAAGGCAGCACATTTTGAGGAGTCAATGAAGTATGCTCGTAGAAGTGTCAGCGATGCAGACATCAGGAAGTACCAGCTGTTTGCTCAGACCCTACAGCAATCTCGTGGGATCGGATCGGAATTTCGGTTCCCCGATCGAACCGACAACGTAACTGCAGGAGCGGCTGACCCATTTTCTTCCGCTGTAGCTGCTGGAGATGATGATGATCTTTACAGCTGA 2463 45.23 MADPTGSSASDKAHASSHSSSDQQNTKRDFSTAILERKKSPNRLVVDEAINDDNSVVSLHPVTMEKLQFFRGDTILLKGKKRRDTVCVVLSDEQCEEPKIRMNKIVRANLRVRLGDVVSVHQCPDVKYGKRVHILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPGEYCVVAPDTEIFCEGEPIKREDEERLNEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPSIIFIDELDSIAPKREKTHGEVERRIVSQLLTLMDGLKTRAHVIVIGATNRPNSIDPALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERVARDTHGYVGADLAALCTEAALQCIREKMDVIDLEDETIDAEVLNSMAVTNEHFQTALGSSNPSALRETVVEVPNVSWDDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGAADRVLNQLLTEMDGMTAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDESSRLQIFKACLRKSPVSKDVNLSALSRYTHGFSGADITEICQRACKYAIRENIEKDLERERKIRENPEAMEEDDIDEVSEIKAAHFEESMKYARRSVSDADIRKYQLFAQTLQQSRGIGSEFRFPDRTDNVTAGAADPFSSAVAAGDDDDLYS 820
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 409327 414197 - Carg20215-RA Car11g00077 156030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00077 820 MobiDBLite consensus disorder prediction 1 30 - -
Car11g00077 820 Pfam Cell division protein 48 (CDC48), domain 2 145 208 IPR004201 -
Car11g00077 820 ProSitePatterns AAA-protein family signature. 358 376 IPR003960 GO:0005524|GO:0016887
Car11g00077 820 CDD AAA 497 664 - -
Car11g00077 820 Pfam AAA+ lid domain 686 725 IPR041569 -
Car11g00077 820 Pfam AAA+ lid domain 410 452 IPR041569 -
Car11g00077 820 CDD AAA 224 387 - -
Car11g00077 820 ProSitePatterns AAA-protein family signature. 634 652 IPR003960 GO:0005524|GO:0016887
Car11g00077 820 MobiDBLite consensus disorder prediction 1 31 - -
Car11g00077 820 Pfam ATPase family associated with various cellular activities (AAA) 258 387 IPR003959 GO:0005524|GO:0016887
Car11g00077 820 Pfam ATPase family associated with various cellular activities (AAA) 531 664 IPR003959 GO:0005524|GO:0016887
Car11g00077 820 SMART AAA_5 254 390 IPR003593 -
Car11g00077 820 SMART AAA_5 527 666 IPR003593 -
Car11g00077 820 MobiDBLite consensus disorder prediction 786 820 - -
Car11g00077 820 Pfam Cell division protein 48 (CDC48), N-terminal domain 43 124 IPR003338 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00077 K13525 VCP, CDC48; transitional endoplasmic reticulum ATPase - csv:101205889 1546.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00509 Car-Chr3:5171355 Car11g00077 Car-Chr11:409327 7.45E-33 dispersed
Car03g01098 Car-Chr3:8868025 Car11g00077 Car-Chr11:409327 0 dispersed
Car07g00893 Car-Chr7:4775693 Car11g00077 Car-Chr11:409327 0 dispersed
Car07g01207 Car-Chr7:7333797 Car11g00077 Car-Chr11:409327 2.51E-48 dispersed
Car08g00355 Car-Chr8:2290971 Car11g00077 Car-Chr11:409327 5.59E-85 dispersed
Car11g00077 Car-Chr11:409327 Car14g00194 Car-Chr14:917797 0 dispersed
Car13g00283 Car-Chr13:5346878 Car11g00077 Car-Chr11:409327 2.24E-41 dispersed
Car18g00566 Car-Chr18:5274710 Car11g00077 Car-Chr11:409327 2.06E-41 dispersed
Car19g00348 Car-Chr19:5370431 Car11g00077 Car-Chr11:409327 1.31E-36 dispersed
Car11g00077 Car-Chr11:409327 Car06g00336 Car-Chr6:1834205 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g791 . . . . . . . . . . . Cma11g00084 . Car11g00077 . . Cpe04g01568 Bhi02g00487 . . . . . . Cla06g01678 Cam06g1866 . Cco06g1920 Clacu06g1821 Cmu06g1763 Cre06g2580 . . Cone13ag0155 . . . . . . . . . . . . . . . Cmo11g00085 . . . . . . . . . . . . . . . . . . . . Lsi06g01567 Csa01g00131 Chy02g02596 Cme02g01992
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000638 2 4 4 4 4 3 5 3 3 3 3 2 5 3 3 5 3 3 5 3 3 3 3 3 3 3 3 3 2 3 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00077 Car_Chr11 FPKM 0.0 0.0 0.188265 0.366182 0.940161 0.992454 0.230971 0.0 0.0 0.103673