Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00079 ATGACTGTTTTAGGAAAGGTTGCAGTTCCAAAACCTATAAACTTACCGAGTCAAAGGTTAGAAAATCATGGTTTGGACCCAAATGTGGAAATTGTACCCAAGGGTACACTCAGTTGGGGCAATAAATCAACTTCATCTGCAACAAATGCATGGGGTTCCTCATCAGTTTCTCCAAATACAGAAAGTGCTTCTAGTTCACCAAGCCATCTCTGTGGTCGCCCTTCATCTGCTGGTGGTGGCACTCGTCCATCAACTGCTGGTAGTGACAGGTCCCATGAACCTCATGGTAATGCGTGGGGCCCAAGTTCTAGACCGTCATCTGCCTCTGGGCCTGTGACATTAAATCACGCATCACTCGCATCCTTACGCCCTCAGAGTGCAGAAACTAAGTCTAGTAGTTCACAATTGTCACGATTTGCAGAGACTTCTGAAAATCCAGTGGCTTGGAATTCTGCTGTGACTACAGAGAAAGTGGGAACAATGCCATGTAAGAGTGATGGGTTTTCTTTGACATCTGGAGATTTTCCTACGCTGGGTTCAGAAAAAGAATGTGTAGGAAAGGGTGCCGAGTCACAAGATAATATGTCCAATGGAGGAGCAACAATGAAAGAGATGACTGGAACTTCGGCAATGGATGATCCTGAAAATGTAACTGCAAGTGTTTATACTTTGAGAAGTGATAATCTTCCACACAACGATGAGGGATCTAGGCCAAATGCAGAGAAATGGGTGGGGCATCCCCAACCTTACCCCGGTGCAAATATTCCTCCCCCACGTTATGATGGCTGGCATGGATCTCCAGTAAACAATCCTCAAGGTGGTGTATGGTATAGAGGTCCTCCACAAGGAGGTCCGCCGTATAGAACTCCAGTTGCTCCTGGTAATTTCCCTATGGATCCATTTCTGTATTATCCTCAGATTCCCCCTGGTGGCCTTCCAAATCCCCACGCTCCTCATGGAACTGGACCCAGGGGTCCCCATCCTAATACTGGAGATATATACAGACCTCCTATGCACGATGGTTTTATTCACCCAGGTGTGTCAATTAGGCCTGGATTTTACCCAGGTCCAGTTACCTATGAGGGGTATTACCGTCCTCCCATGGGCTACTGTAATTCGAATGATAGAGATGCTCCATTTATGGGAATGCCTGCTGGGCCTTCTGGACCTTCTGGGCCTGCTGGTCCTGCTGGTCCTGCTGTTTACAACAGGCACTTGGGCCTGGGCAAAAGTGCCTCTGAGCCTGCAAGTTCCCATGGCTTATCCAGTGGACATGGTTCTAGTGGAAAGGCTTTGGTTCCAGAACAAGTAGAATCTGATCTTCCTTGTGATAATCAAGGACCATACAAGGTTCTGATGCAGCAGGGAAACTTGAATGGTAAGAACGAAGAAGAAGAAAATAGGGTAAACCCAACAACTACTAATCAGTTGATTCTTGAGAAGGCTGACCAACAGAGGGCGTCTCCATGGGAGAATGACTGGGATCATAAAAAGGAAGTTGATGCGAGGAAAAGAACATTTGGGGTGGAACCATTTGCTCAGGCTTCTGCCAGCCATAAAGCTCAATCTTCTGAAAATATTGAAGGGAAGTCCTGTGGAAGCATGAGGACTGGTGATGGTTTACTAGAAAAATCAGATGCTGCTGCTTCTGGTTTCTCTGAAGTTTCGAAATCACTGGCTCCTGCCACAAAAGATTCAAGTCTGATTCAGAAGATAGAGGGACTAAATGCCAAAGCCCGGGCTTCTGATGTGCGACATGATGATGCACTTATTTCCAGCAGGGAGGAGTCAAATGAGCTTCAATCTAAAGATAAGCACTCTGATCATTTTTTTGCCCATGAAGCTGGTGTGAGTACTGTTCTTCCTCAAAATAGGGATTTTAATGAAGTCATAGACCCTGCCTCCTGTGAATTGAGCTTGTCCACTGGTGATAGGAACGTTAAATTATACAGTGGAGCACCCGTTCACAGGAGGTCTAACCGTGGAATGCAAGGGAGAAATGATCACCATGGTCGAGGAAAAGTCAATACGCAAGAGGTTGAAGGGTGGCATAAAAGACCCATATTGGACTCCCCAGGCATGATAGCTACTCCCCAGGAAAGTTCTGTTCTTGCGAGAGACCACAGCGCTTTAGGGGCTATTGATAAGGCGGAGTCATTTCCTTCTGATAGCCATGGAGATGTACCTGCCCCATCCGTAGGTGATTCAAAAGATAGTCAAGCTCAGCGTACAAAGATGAGAGAGCTAGCAAAGCAACGCACCAAACAACTGCAGGAGGAAGAGGAGGAAAGGACTAGAAAACAGAAGGCCAGGGCCTTGGCAAAACTTGAAGAGTTGAACAGGCGTACAGTAGCAGGGGAAGGGCCAACTCAGTGGTCTGAAAATGCATCTAATGATGCCATTAGAAATAAGATAGAAGAACCTCGAAATGTTGGTAACCCAAGAACGATTGATATGATATCTGGAGAGCATAACACAGTTTCTGATCTGCACGTGGTTGCTAACAATAGTGAGTCAACTATGGGCACTAACAAGAATTCTCCCATTGTATCAGAAAATACATCATCGAAGAATCAGAGTAGTGGCAATAAGGAAAAGGTTGTGGCACCTATTGAATCAAGACCTATTGAGCAGGATGCAGCTCAAAATAAGAACGTCTCTGAGGTAAATGGGGGCGGTGCATCCTTGAAGCACAAGCGTACAGGAAATAAACAGAAACCAAATACTCCATCTGACAAGACTGAAAAGCTTCCCCATTTAGTTAAGGAATCGAAAAGTCAGACCGTTGTTGCTGACATTCATTCAGTTGTAGAGGAGTCGAGCAATGTTCACTACAGATCCTGTTGCTGA 2850 45.82 MTVLGKVAVPKPINLPSQRLENHGLDPNVEIVPKGTLSWGNKSTSSATNAWGSSSVSPNTESASSSPSHLCGRPSSAGGGTRPSTAGSDRSHEPHGNAWGPSSRPSSASGPVTLNHASLASLRPQSAETKSSSSQLSRFAETSENPVAWNSAVTTEKVGTMPCKSDGFSLTSGDFPTLGSEKECVGKGAESQDNMSNGGATMKEMTGTSAMDDPENVTASVYTLRSDNLPHNDEGSRPNAEKWVGHPQPYPGANIPPPRYDGWHGSPVNNPQGGVWYRGPPQGGPPYRTPVAPGNFPMDPFLYYPQIPPGGLPNPHAPHGTGPRGPHPNTGDIYRPPMHDGFIHPGVSIRPGFYPGPVTYEGYYRPPMGYCNSNDRDAPFMGMPAGPSGPSGPAGPAGPAVYNRHLGLGKSASEPASSHGLSSGHGSSGKALVPEQVESDLPCDNQGPYKVLMQQGNLNGKNEEEENRVNPTTTNQLILEKADQQRASPWENDWDHKKEVDARKRTFGVEPFAQASASHKAQSSENIEGKSCGSMRTGDGLLEKSDAAASGFSEVSKSLAPATKDSSLIQKIEGLNAKARASDVRHDDALISSREESNELQSKDKHSDHFFAHEAGVSTVLPQNRDFNEVIDPASCELSLSTGDRNVKLYSGAPVHRRSNRGMQGRNDHHGRGKVNTQEVEGWHKRPILDSPGMIATPQESSVLARDHSALGAIDKAESFPSDSHGDVPAPSVGDSKDSQAQRTKMRELAKQRTKQLQEEEEERTRKQKARALAKLEELNRRTVAGEGPTQWSENASNDAIRNKIEEPRNVGNPRTIDMISGEHNTVSDLHVVANNSESTMGTNKNSPIVSENTSSKNQSSGNKEKVVAPIESRPIEQDAAQNKNVSEVNGGGASLKHKRTGNKQKPNTPSDKTEKLPHLVKESKSQTVVADIHSVVEESSNVHYRSCC 949
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 423467 432557 + Carg20217-RA Car11g00079 156032

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00079 949 MobiDBLite consensus disorder prediction 513 538 - -
Car11g00079 949 MobiDBLite consensus disorder prediction 381 431 - -
Car11g00079 949 MobiDBLite consensus disorder prediction 1 153 - -
Car11g00079 949 MobiDBLite consensus disorder prediction 656 695 - -
Car11g00079 949 MobiDBLite consensus disorder prediction 836 926 - -
Car11g00079 949 MobiDBLite consensus disorder prediction 190 204 - -
Car11g00079 949 MobiDBLite consensus disorder prediction 516 531 - -
Car11g00079 949 MobiDBLite consensus disorder prediction 100 153 - -
Car11g00079 949 MobiDBLite consensus disorder prediction 181 214 - -
Car11g00079 949 MobiDBLite consensus disorder prediction 905 922 - -
Car11g00079 949 Coils Coil 743 782 - -
Car11g00079 949 MobiDBLite consensus disorder prediction 37 91 - -
Car11g00079 949 Pfam BAT2 N-terminus 1 118 IPR009738 -
Car11g00079 949 MobiDBLite consensus disorder prediction 740 782 - -
Car11g00079 949 MobiDBLite consensus disorder prediction 311 332 - -
Car11g00079 949 MobiDBLite consensus disorder prediction 578 604 - -
Car11g00079 949 MobiDBLite consensus disorder prediction 836 866 - -
Car11g00079 949 MobiDBLite consensus disorder prediction 661 686 - -
Car11g00079 949 MobiDBLite consensus disorder prediction 717 804 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00079 - - - mcha:111007408 1466.83
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00106 Car11g00079 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car10g00106 Car-Chr10:490808 Car11g00079 Car-Chr11:423467 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g781 . . . . . . . . . . Cma10g00119 Cma11g00088 Car10g00106 Car11g00079 Sed08g0103 . Cpe04g01566 Bhi02g00478 Tan09g2266 Cmetu02g1512 . Hepe09g0213 . . Cla06g01673 Cam06g1861 Cec06g1911 Cco06g1916 Clacu06g1817 Cmu06g1758 Cre06g2575 . . . . . . . . . Blo15g00262 . . Bpe07g00848 . . . . Cmo10g00123 Cmo11g00088 . . . . . Cpe18g00849 . . . . . . . . . . . . . . Lsi06g01564 Csa01g00136 Chy02g02591 Cme02g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006102 0 1 1 0 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00079 Car_Chr11 FPKM 1.279793 1.298365 9.443024 11.27532 4.608578 4.59105 3.973337 2.022904 2.178126 1.932974