Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00081 ATGACTGTAGACAATATCTTGTCCCACGCTTCTCTTGAATGGAAGTTCTCTCAGGTCTTCGGCGAACGAGTTGCCGGAGAGGATATTCAGGATGTTGATATCATATCTGCAGTTGGATTCGATAAGAGTGGTGATAACCTTGCCATTGGCGATCGAGGTGGTCGTGTTATTATATTTGAAAGAAACGACAGGAAGGATACTTCGAAAAATATCCATACTCGGAATAAGTTGGAGCAGTTGAATCGTACTCCTGCATCTCATCCTGAATACCAATACAAGACTGAATTTCAGAGTCATGAGCCTGAGTTTGATTACTTGAAGAGTTTGGAAATTGAAGAGAAGATTAATAAAGTAAAGTGGTGCGTATCACCCAATGGATCTCGCTTCATCCTTTCAACAAATGACAAAACTATTAAACTATGGAAGGTTAAGGAGCACAAGGCGAAAACCATTAAAGAGATGAACCATGATCAATATGTGAGTTCAGAAAATGCACTTTTGGCAGAGATGAGTTTCTCTAGCGAACAAGGAAAATTCTCTCTTTCCAGTGGCTGCCATCGGGATCTTTCAGAGAATACGGCGATGAATAAGGTAGCGTCTAAAGACATTAATGACATGATTCCTGATCTAGACGATACTTCTTGGAGAAGATGCCGAAAGGTGTATGGTCATGCTCATGATTTTAATATTAACTCCATTTCTAACAATAGTGATGGCGAGACGTTTATTTCTGCTGATGACTTGCGAATAAACTTATGGAACCTCGAGATTAGTAATCAGTGTTTCAATATCATTGACATGAAGCCTTCAAACATGGAAGATCTTACGGAGATCATAACGTCGGCTGAATTCCATCCTCTGCACTGTAATCTTCTTGCGTACAGTAGCTCAAGGGGCTTTATTCGTTTAGTGGATATGCGCCAGTCTGCATTATGTGATCATAGTGCAATTCTATTACGAGCCCAAGAATTGAGTCGACCAAAATCATTTTTTACGGAGATCATTTCTTCCATTTCGGATATAAAATTTTCAAGTGATGGGCGGTTCATCATTAGTCGGGATTACATGAATTTAAAGCTTTGGGATATCCATAAGGGTTCTTCTCCAGTCGCAGTTTTCAAGGTTCATGAGCACCTGCGACCTAGGTTGTGTGAGCTGTATGATAACGATTCCATATTTGATAGATTTGAATGTTGCCTAAGTCCAGACGGACTTCACTTTGCAACTGGATCTTATAGCAACCAATTACGGATGTTCTCTTATGGCTATGGAAGTGCGGAAGGGATCACTACTGAAGCGGGGAAAACTCCCGATAGGAAGCCAAATCTCCAAACCGCTAGGCGGGCTAGACGACGATCATCCTTAAGCAATTTGACACGTGATTTTTTTCGGCACGGCAATGAACATTCAAGCTCGGGAAGTAATGAAGCTTCTGTTGACCTGAACTCCAAGTTACTACATTTGGCGTGGCATCCAACAGAAAATTTAATCGCCTGTGCTACTGGAAGTGGCCTGTTCATGTATTATGCATAA 1533 41.16 MTVDNILSHASLEWKFSQVFGERVAGEDIQDVDIISAVGFDKSGDNLAIGDRGGRVIIFERNDRKDTSKNIHTRNKLEQLNRTPASHPEYQYKTEFQSHEPEFDYLKSLEIEEKINKVKWCVSPNGSRFILSTNDKTIKLWKVKEHKAKTIKEMNHDQYVSSENALLAEMSFSSEQGKFSLSSGCHRDLSENTAMNKVASKDINDMIPDLDDTSWRRCRKVYGHAHDFNINSISNNSDGETFISADDLRINLWNLEISNQCFNIIDMKPSNMEDLTEIITSAEFHPLHCNLLAYSSSRGFIRLVDMRQSALCDHSAILLRAQELSRPKSFFTEIISSISDIKFSSDGRFIISRDYMNLKLWDIHKGSSPVAVFKVHEHLRPRLCELYDNDSIFDRFECCLSPDGLHFATGSYSNQLRMFSYGYGSAEGITTEAGKTPDRKPNLQTARRARRRSSLSNLTRDFFRHGNEHSSSGSNEASVDLNSKLLHLAWHPTENLIACATGSGLFMYYA 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 434693 439694 - Carg20219-RA Car11g00081 156034

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00081 510 Pfam WD domain, G-beta repeat 217 254 IPR001680 GO:0005515
Car11g00081 510 MobiDBLite consensus disorder prediction 430 453 - -
Car11g00081 510 ProSitePatterns Protein phosphatase 2A regulatory subunit PR55 signature 1. 102 116 IPR018067 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00081 K04354 PPP2R2; serine/threonine-protein phosphatase 2A regulatory subunit B - csv:101206601 868.226
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g00057 Car-Chr1:313434 Car11g00081 Car-Chr11:434693 0 dispersed
Car08g00642 Car-Chr8:4134064 Car11g00081 Car-Chr11:434693 0 dispersed
Car11g00081 Car-Chr11:434693 Car14g01123 Car-Chr14:9923324 0 dispersed
Car10g00109 Car-Chr10:520745 Car11g00081 Car-Chr11:434693 3.48E-09 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g775 . . . . . . . Bma12g01043 . . . Cma11g00090 . Car11g00081 Sed08g0112 . Cpe04g01565 Bhi02g00459 Tan09g2259 Cmetu02g0570 . Hepe09g0209 . . Cla06g01669 Cam06g1857 Cec06g1905 Cco06g1911 Clacu06g1813 Cmu06g1754 Cre06g2572 . . . . . . . . . Blo15g00263 . . Bpe07g00846 . . . . . Cmo11g00089 . . . . . . . . . . . . . . . . . . . . . Csa01g00142 Chy02g02586 Cme02g01984
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007287 0 3 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 6 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00081 Car_Chr11 FPKM 0.0 0.0 0.409865 0.361164 1.905887 0.0 0.480861 0.280868 0.0 0.452045