Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00082 ATGGCGGATCTTTACGGACTCCATCCTCTCGCGGACTACTCCTACGAGTCCTCTTCAGCGGCTCCGTTGGACAACCTCCTCGTTCCGGTTAATTATCAGGCCTATTCTACTGCTTCTTCAGATTATTCTCATCCGCTTCAGGTTTTTGGATCGGGACACGTACCGTCGGTGTCGTCGGGGGACTACGATGCCGCTTTAGTGGCGGTTGTTTCCGAGGAGGAGTCTGCGGGTGCAATTAGAGAGAAAATTGCTTCTCATCCTCTTTACCCTAGACTTGTCGATGCGTTTGTTGACTGCCAAAAGATCGGTGCACCGCCGGAGGTCGCTAATATCCTAGGCAGAAGCGTTCGAGGAAGTGATATCGGCGAAAGAACTTCCAGCGTTTCAACTCGCTTGGGTGCCGATCCCGAGCTCGATGAGTTCATGGTGTTTGCTTTGCTTGCCGAAACATACTGCGGGATACTGGCGAAGTACAAGCTGGATCTCTCCCTGCCCTTTGTTGAAGCATCTTCCTTCCTCAACAACATGGAAACGCAGTTAAACAGGCTATGTAACGGCACCACCAGAGGCTACGTTTCCGATGAAGCTGCTGCTGGTTCATCAGAAGAGGATGTAAGTGCCGGAGAAGTAGAATTGCAGGACTCTCTGTGGGCGAATGAAGATCGTGAGCTGAAGGATCGACTCCTACGCAAGTATGGTGGTTATCTTAGTAGCTTAAAGCAAGAATTTTCAAAAACTAAAAAGAAGATAAAACTACCAAAAGAATCCAGACAGATCCTGCTTGACTGGTGGAACGTCCATTGCAAATGGCCTTACCCCACTGAGATGGACAAAATTGAGTTGGCGGAGTCGACAGGGCTTGACCCTAAACAAATTAACAACTGGTTCATAAACCAGAGAAAACGGCATTGGAAAGCATCAGAGAATATGCAATTTGGTGATGTGCATGGGGTGTTTACGGCGGACCCCTTGTGA 975 48.92 MADLYGLHPLADYSYESSSAAPLDNLLVPVNYQAYSTASSDYSHPLQVFGSGHVPSVSSGDYDAALVAVVSEEESAGAIREKIASHPLYPRLVDAFVDCQKIGAPPEVANILGRSVRGSDIGERTSSVSTRLGADPELDEFMVFALLAETYCGILAKYKLDLSLPFVEASSFLNNMETQLNRLCNGTTRGYVSDEAAAGSSEEDVSAGEVELQDSLWANEDRELKDRLLRKYGGYLSSLKQEFSKTKKKIKLPKESRQILLDWWNVHCKWPYPTEMDKIELAESTGLDPKQINNWFINQRKRHWKASENMQFGDVHGVFTADPL 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 440410 444862 - Carg20220-RA Car11g00082 156035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00082 324 ProSiteProfiles 'Homeobox' domain profile. 243 306 IPR001356 GO:0003677
Car11g00082 324 Pfam KNOX1 domain 78 113 IPR005540 GO:0003677|GO:0005634
Car11g00082 324 Pfam ELK domain 223 244 IPR005539 GO:0003677
Car11g00082 324 Pfam Homeobox KN domain 263 302 IPR008422 GO:0003677|GO:0006355
Car11g00082 324 ProSitePatterns 'Homeobox' domain signature. 281 304 IPR017970 GO:0000981|GO:0006355
Car11g00082 324 Pfam KNOX2 domain 132 184 IPR005541 GO:0003677|GO:0005634
Car11g00082 324 ProSiteProfiles ELK domain profile. 223 243 IPR005539 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01779 Car-Chr4:10166478 Car11g00082 Car-Chr11:440410 2.08E-93 dispersed
Car11g00082 Car-Chr11:440410 Car12g00568 Car-Chr12:3802660 2.39E-65 dispersed
Car12g00020 Car-Chr12:114752 Car11g00082 Car-Chr11:440410 5.15E-07 dispersed
Car18g00716 Car-Chr18:8359753 Car11g00082 Car-Chr11:440410 7.89E-46 dispersed
Car18g00717 Car-Chr18:8364211 Car11g00082 Car-Chr11:440410 7.18E-47 dispersed
Car11g00082 Car-Chr11:440410 Car05g00025 Car-Chr5:135513 6.40E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4222 PF03791 KNOX2 3.50E-16 No_clan Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00082 - - bhj:120070843 394.815