Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00100 ATGGCTACTCGAGGCGTCGATTTCAAGTGGTATGACGGTTTTTTCTTGTCGATGCTCGCGACTAAGTTGGAGACGAATTCATGTCCTATGCTTAAAAATCTCGAGCAATGTATTTCTCTTTACGTATTTTATTTGTGTATTTTCTTTAACTATTTGCTTGATAGAGTAATAGTTTCGATCAGTTGGAAGAGGTATCATACTTGTGTACATCCCCTGCATATATGGATTGTGGTTGATTACACTGCCGTCTTTCTTTTTCGCCTGCTGATGTTTGTAGACAATGGACTTGCCGCTGGAATGGGTTTGGACTTTGGGTGGCAGCAAAGATATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTAGCGCTTCTGCTATTTCCATTTCTTTGGGTTTGGACTGCCATTGGTACTTTATGGTTTAAGCAGGCCCATAATTGTCTTCCTGAGCAAGGTCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCCCTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCACAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCTGCAGGAATAGAAACTAGGGTAATGGGTCAAGATGCTGCTACCTACCATCCTCATCCCGGACTTTACTTGACTCCAGCTCAGAGGGAAGCTGTGGAGGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGCCCTATCTGCTTAGAAGAGTTCCATGAAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGTATTGATGAGTGGCTTCGACTGAATGTGAAATGCCCTAGATGTCGTTGCTCGGTCTTCCCGAACCTTGACCTCAGTGCTCTGTCCAATCTTCGTTCTGATACCGATAGGCCTTCTGCAAGTGTTGTTACAGCCAATAGCTATATGATATCTCATCCTTTGAGCCAAAGTTATCTAGTGAGACTGCAGGGTCTGCTTCGACCTGTTCGCACAGAAAACACAGGTACACATGGTGATTTAGAATCTGCTAGTGCTGTGGAAGTTACTGAGAATGGGTCCGCCCATGACCAAACTATACCAGAACGGTCTCCCGTAAGACCCATGCCTTTAAGTCAGTCTACACCACAACTCTAG 1236 44.74 MATRGVDFKWYDGFFLSMLATKLETNSCPMLKNLEQCISLYVFYLCIFFNYLLDRVIVSISWKRYHTCVHPLHIWIVVDYTAVFLFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLFPFLWVWTAIGTLWFKQAHNCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGIETRVMGQDAATYHPHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHEGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRSDTDRPSASVVTANSYMISHPLSQSYLVRLQGLLRPVRTENTGTHGDLESASAVEVTENGSAHDQTIPERSPVRPMPLSQSTPQL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 574218 578975 - Carg18136-RA Car11g00100 156053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00100 411 MobiDBLite consensus disorder prediction 369 392 - -
Car11g00100 411 ProSiteProfiles Zinc finger RING-type profile. 269 310 IPR001841 -
Car11g00100 411 MobiDBLite consensus disorder prediction 366 411 - -
Car11g00100 411 Pfam Ring finger domain 268 310 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g00100 Car18g00155 CCT
Car11g00100 Car13g00734 CCT
Car10g00121 Car11g00100 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00100 Car-Chr11:574218 Car14g00446 Car-Chr14:2341757 4.71E-13 dispersed
Car10g00121 Car-Chr10:569970 Car11g00100 Car-Chr11:574218 0 wgd
Car11g00100 Car-Chr11:574218 Car13g00734 Car-Chr13:8446837 5.66E-130 wgd
Car11g00100 Car-Chr11:574218 Car18g00155 Car-Chr18:834119 4.63E-179 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00100 K16284 - csv:101208939 686.026