Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00100 ATGGCTACTCGAGGCGTCGATTTCAAGTGGTATGACGGTTTTTTCTTGTCGATGCTCGCGACTAAGTTGGAGACGAATTCATGTCCTATGCTTAAAAATCTCGAGCAATGTATTTCTCTTTACGTATTTTATTTGTGTATTTTCTTTAACTATTTGCTTGATAGAGTAATAGTTTCGATCAGTTGGAAGAGGTATCATACTTGTGTACATCCCCTGCATATATGGATTGTGGTTGATTACACTGCCGTCTTTCTTTTTCGCCTGCTGATGTTTGTAGACAATGGACTTGCCGCTGGAATGGGTTTGGACTTTGGGTGGCAGCAAAGATATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAGTCCTAGCGCTTCTGCTATTTCCATTTCTTTGGGTTTGGACTGCCATTGGTACTTTATGGTTTAAGCAGGCCCATAATTGTCTTCCTGAGCAAGGTCAGAAATGGGGATTCCTAATTTGGTTGCTTTTTAGCTACTGTGCCCTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTGTTTCGGGCACAACAAGGGATCCCTGTATCAGAATATGGGGTCTTGGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCTGCAGGAATAGAAACTAGGGTAATGGGTCAAGATGCTGCTACCTACCATCCTCATCCCGGACTTTACTTGACTCCAGCTCAGAGGGAAGCTGTGGAGGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCAGTGAATGCCCTATCTGCTTAGAAGAGTTCCATGAAGGGAATGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGTATTGATGAGTGGCTTCGACTGAATGTGAAATGCCCTAGATGTCGTTGCTCGGTCTTCCCGAACCTTGACCTCAGTGCTCTGTCCAATCTTCGTTCTGATACCGATAGGCCTTCTGCAAGTGTTGTTACAGCCAATAGCTATATGATATCTCATCCTTTGAGCCAAAGTTATCTAGTGAGACTGCAGGGTCTGCTTCGACCTGTTCGCACAGAAAACACAGGTACACATGGTGATTTAGAATCTGCTAGTGCTGTGGAAGTTACTGAGAATGGGTCCGCCCATGACCAAACTATACCAGAACGGTCTCCCGTAAGACCCATGCCTTTAAGTCAGTCTACACCACAACTCTAG 1236 44.74 MATRGVDFKWYDGFFLSMLATKLETNSCPMLKNLEQCISLYVFYLCIFFNYLLDRVIVSISWKRYHTCVHPLHIWIVVDYTAVFLFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSVLALLLFPFLWVWTAIGTLWFKQAHNCLPEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGIETRVMGQDAATYHPHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCSECPICLEEFHEGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRSDTDRPSASVVTANSYMISHPLSQSYLVRLQGLLRPVRTENTGTHGDLESASAVEVTENGSAHDQTIPERSPVRPMPLSQSTPQL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 574218 578975 - Carg18136-RA Car11g00100 156053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00100 411 MobiDBLite consensus disorder prediction 369 392 - -
Car11g00100 411 ProSiteProfiles Zinc finger RING-type profile. 269 310 IPR001841 -
Car11g00100 411 MobiDBLite consensus disorder prediction 366 411 - -
Car11g00100 411 Pfam Ring finger domain 268 310 IPR001841 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00100 K16284 SIS3; E3 ubiquitin-protein ligase SIS3 [EC:2.3.2.27] - csv:101208939 686.026
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g00100 Car18g00155 CCT
Car11g00100 Car13g00734 CCT
Car10g00121 Car11g00100 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00100 Car-Chr11:574218 Car14g00446 Car-Chr14:2341757 4.71E-13 dispersed
Car10g00121 Car-Chr10:569970 Car11g00100 Car-Chr11:574218 0 wgd
Car11g00100 Car-Chr11:574218 Car13g00734 Car-Chr13:8446837 5.66E-130 wgd
Car11g00100 Car-Chr11:574218 Car18g00155 Car-Chr18:834119 4.63E-179 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g735 . . . . Bpe12g00593 . . . . Cmo18g00124 Cma10g00129 Cma11g00101 Car10g00121 Car11g00100 Sed08g0132 Cpe20g00235 . Bhi02g00435 Tan09g2237 Cmetu02g1086 . Hepe09g0195 . . Cla06g01657 Cam06g1842 Cec06g1893 Cco06g1898 Clacu06g1802 . Cre06g2561 . . . Cone19ag0136 . Csa01g00843 Chy12g01273 . . . . . . . . Bma08g00169 . Cmo10g00136 Cmo11g00101 . . Car13g00734 Car18g00155 Cpe09g01032 Cpe18g00841 Bhi08g01598 . . Lac10g0440 . . . Cla01g01293 Cam01g1437 Cec01g1471 Cco01g1455 Clacu01g1360 Cmu01g1265 Cre01g1271 Lsi06g01547 Csa01g00157 Chy02g02573 Cme02g01963
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car08g00187 CST 72 560 C3H Transcription Factor Family AT2G31510 75.9 1.2e-227 786.2
Car17g00550 CST 129 610 C3H Transcription Factor Family AT2G31510 76.4 6.7e-226 780.4
Car12g00952 . 127 449 C3H Transcription Factor Family AT2G31510 78.0 1.6e-163 573.2
Car08g00187 CST 55 531 C3H Transcription Factor Family AT2G31770 58.5 1.2e-170 597.0
Car17g00550 CST 112 574 C3H Transcription Factor Family AT2G31770 59.9 9.8e-170 594.0
Car12g00952 . 96 459 C3H Transcription Factor Family AT2G31770 53.6 3.8e-121 432.6
Car17g00550 CST 112 581 C3H Transcription Factor Family AT2G31760 58.3 3.3e-167 585.5
Car08g00187 CST 55 524 C3H Transcription Factor Family AT2G31760 57.8 9.6e-167 583.9
Car12g00952 . 110 459 C3H Transcription Factor Family AT2G31760 55.3 8.8e-120 427.9
Car02g01377 . 1 193 C3H Transcription Factor Family AT3G03550 50.7 2.5e-49 193.4
Car03g01008 . 8 169 C3H Transcription Factor Family AT5G06490 50.8 2.3e-44 176.0
Car03g01008 . 8 169 C3H Transcription Factor Family AT5G06490 50.8 2.3e-44 176.0
Car04g02713 CST 1 223 C3H Transcription Factor Family AT3G02290 60.2 2.4e-72 269.2
Car15g00226 CST 1 220 C3H Transcription Factor Family AT3G02290 60.5 3.4e-71 265.4
Car11g00431 . 1 364 C3H Transcription Factor Family AT1G11020 65.0 2.4e-131 465.7
Car10g00537 . 1 339 C3H Transcription Factor Family AT1G11020 63.9 1.7e-116 416.4
Car01g00002 . 32 178 C3H Transcription Factor Family AT1G50440 65.6 3.5e-55 212.2
Car14g01037 . 59 166 C3H Transcription Factor Family AT1G50440 84.3 8.8e-51 197.6
Car14g01038 . 14 98 C3H Transcription Factor Family AT1G50440 85.9 7.0e-40 161.4
Car07g01215 . 1 315 C3H Transcription Factor Family AT5G08750 60.2 1.0e-98 357.5
Car03g00028 . 8 305 C3H Transcription Factor Family AT5G08750 52.2 6.7e-82 301.6
Car04g00360 . 1 536 C3H Transcription Factor Family AT3G16090 62.8 2.8e-171 599.0
Car16g00235 . 29 371 C3H Transcription Factor Family AT3G16090 80.8 3.3e-156 548.9
Car01g00824 . 31 182 C3H Transcription Factor Family AT1G22510 66.5 9.7e-54 207.2
Car15g00226 CST 1 220 C3H Transcription Factor Family AT5G38895 56.6 3.2e-70 262.7
Car04g02713 CST 1 223 C3H Transcription Factor Family AT5G38895 55.4 2.1e-69 260.0
Car05g00180 . 21 227 C3H Transcription Factor Family AT1G19310 67.3 1.3e-78 290.0
Car12g00466 CCT,CST,ECH 16 223 C3H Transcription Factor Family AT1G19310 66.2 4.5e-76 281.6
Car03g00926 . 16 225 C3H Transcription Factor Family AT1G19310 59.4 5.3e-69 258.1
Car07g00739 . 19 221 C3H Transcription Factor Family AT1G19310 59.2 3.2e-66 248.8
Car01g00824 . 35 182 C3H Transcription Factor Family AT1G72175 67.5 2.2e-50 195.7
Car01g00434 . 9 188 C3H Transcription Factor Family AT1G26800 51.3 2.6e-46 182.6
Car03g00714 . 9 330 C3H Transcription Factor Family AT2G22120 81.8 1.3e-157 553.1
Car05g00413 . 73 180 C3H Transcription Factor Family AT5G07040 65.7 1.2e-38 156.8
Car10g00236 CST 1 407 C3H Transcription Factor Family AT1G18470 73.5 2.1e-175 612.5
Car11g00236 CST 1 403 C3H Transcription Factor Family AT1G18470 68.8 7.4e-165 577.4
Car04g01965 . 11 389 C3H Transcription Factor Family AT1G18470 64.3 1.5e-141 500.0
Car19g00344 CST 127 283 C3H Transcription Factor Family AT4G33565 52.1 3.2e-39 159.8
Car08g00187 CST 55 531 C3H Transcription Factor Family AT2G31770 58.5 1.2e-170 597.0
Car17g00550 CST 112 574 C3H Transcription Factor Family AT2G31770 59.9 9.8e-170 594.0
Car12g00952 . 96 459 C3H Transcription Factor Family AT2G31770 53.6 3.8e-121 432.6
Car17g00550 CST 112 581 C3H Transcription Factor Family AT2G31760 58.3 3.3e-167 585.5
Car08g00187 CST 55 524 C3H Transcription Factor Family AT2G31760 57.8 9.6e-167 583.9
Car12g00952 . 110 459 C3H Transcription Factor Family AT2G31760 55.3 8.8e-120 427.9
Car09g00929 CCT,CST 41 270 C3H Transcription Factor Family AT5G55970 67.4 5.3e-91 331.6
Car01g00937 CCT,CST 20 276 C3H Transcription Factor Family AT5G55970 61.2 7.0e-91 331.3
Car07g01215 . 1 315 C3H Transcription Factor Family AT5G63780 54.2 1.5e-89 327.0
Car03g00028 . 8 305 C3H Transcription Factor Family AT5G63780 50.6 2.3e-77 286.6
Car06g00088 . 28 426 C3H Transcription Factor Family AT3G58030 52.5 5.6e-99 358.6
Car14g00377 . 22 418 C3H Transcription Factor Family AT3G58030 52.8 1.4e-97 354.0
Car01g00937 CCT,CST 35 343 C3H Transcription Factor Family AT4G26580 61.4 2.9e-111 399.1
Car09g00929 CCT,CST 39 334 C3H Transcription Factor Family AT4G26580 63.2 7.0e-110 394.4
Car09g01077 CCT 8 143 C3H Transcription Factor Family AT4G10150 55.7 2.4e-43 172.9
Car07g01160 CST 28 494 C3H Transcription Factor Family AT5G01960 69.9 3.1e-171 598.6
Car03g00234 CST 1 465 C3H Transcription Factor Family AT5G01960 70.0 2.0e-170 595.9
Car04g00979 . 15 471 C3H Transcription Factor Family AT5G01960 56.8 3.0e-137 485.7
Car04g00089 . 1 456 C3H Transcription Factor Family AT5G01960 53.4 2.4e-131 466.1
Car07g00640 . 1 151 C3H Transcription Factor Family AT2G04240 58.6 3.6e-43 171.8
Car20g00604 . 92 245 C3H Transcription Factor Family AT2G04240 56.2 4.0e-42 168.3
Car19g00652 . 1 149 C3H Transcription Factor Family AT2G04240 59.7 9.2e-39 157.1
Car02g01060 CST 15 243 C3H Transcription Factor Family AT5G19430 55.8 1.2e-64 243.8
Car20g00093 CST 42 211 C3H Transcription Factor Family AT5G19430 57.5 1.3e-47 187.2
Car16g00458 . 141 578 C3H Transcription Factor Family AT5G45290 51.7 2.3e-94 343.6
Car02g01060 CST 17 243 C3H Transcription Factor Family AT5G12310 53.9 4.0e-57 218.8
Car20g00093 CST 42 211 C3H Transcription Factor Family AT5G12310 54.8 8.7e-44 174.5
Car11g00315 . 77 374 C3H Transcription Factor Family AT5G05810 51.7 3.8e-73 272.7
Car06g00229 CCT,CST,ECH 71 233 C3H Transcription Factor Family AT5G05830 63.2 8.0e-56 214.2
Car14g00080 CCT,CST,ECH 70 231 C3H Transcription Factor Family AT5G05830 60.5 2.6e-54 209.1
Car15g00128 . 35 192 C3H Transcription Factor Family AT5G05830 51.2 2.5e-41 166.0
Car07g01016 CCT,ECH 33 163 C3H Transcription Factor Family AT5G05830 61.4 3.0e-39 159.1
Car04g02713 CST 1 223 C3H Transcription Factor Family AT5G15790 59.6 9.0e-72 267.3
Car15g00226 CST 1 220 C3H Transcription Factor Family AT5G15790 59.9 4.9e-70 261.5
Car15g00107 CST 1 272 C3H Transcription Factor Family AT3G55530 81.0 7.0e-116 414.1
Car04g02837 CST 69 202 C3H Transcription Factor Family AT3G55530 62.4 1.1e-44 177.6
Car08g00323 . 1 273 C3H Transcription Factor Family AT1G63900 74.1 6.0e-115 411.0
Car06g01018 . 10 393 C3H Transcription Factor Family AT2G44580 52.6 6.4e-115 411.4
Car05g00180 . 25 150 C3H Transcription Factor Family AT1G74990 60.6 6.4e-41 164.1
Car12g00466 CCT,CST,ECH 25 150 C3H Transcription Factor Family AT1G74990 60.6 8.3e-41 163.7
Car07g00739 . 10 145 C3H Transcription Factor Family AT1G74990 52.1 5.6e-37 151.0
Car01g01302 . 3 314 C3H Transcription Factor Family AT5G20910 62.9 3.3e-106 382.1
Car04g00360 . 119 535 C3H Transcription Factor Family AT1G65040 53.9 1.3e-108 390.2
Car16g00235 . 147 382 C3H Transcription Factor Family AT1G65040 73.0 4.4e-93 338.6
Car03g00926 . 17 227 C3H Transcription Factor Family AT2G23780 62.1 8.5e-75 277.3
Car07g00739 . 8 223 C3H Transcription Factor Family AT2G23780 57.4 2.8e-70 262.3
Car05g00180 . 6 229 C3H Transcription Factor Family AT2G23780 56.5 4.5e-68 255.0
Car12g00466 CCT,CST,ECH 6 226 C3H Transcription Factor Family AT2G23780 56.4 5.0e-67 251.5
Car07g01080 CCT 13 311 C3H Transcription Factor Family AT3G10810 58.2 1.8e-82 303.9
Car17g00515 . 1 319 C3H Transcription Factor Family AT3G10810 55.0 4.1e-82 302.8
Car14g00464 CCT 1 317 C3H Transcription Factor Family AT3G10810 52.1 3.6e-78 289.7
Car15g01120 . 1 170 C3H Transcription Factor Family AT1G63840 57.2 7.9e-46 180.6
Car02g01203 . 1 170 C3H Transcription Factor Family AT1G63840 57.8 1.0e-45 180.3
Car08g00777 . 1 152 C3H Transcription Factor Family AT1G63840 51.3 1.7e-40 162.9
Car04g02046 . 7 411 C3H Transcription Factor Family AT1G68070 54.5 6.7e-108 387.9
Car16g00969 CCT,CST 47 376 C3H Transcription Factor Family AT1G68070 50.6 9.5e-86 314.3
Car01g01599 . 4 174 C3H Transcription Factor Family AT1G76410 57.8 7.0e-51 197.6
Car09g00029 . 4 178 C3H Transcription Factor Family AT1G76410 55.4 2.0e-50 196.1
Car06g00141 . 2 141 C3H Transcription Factor Family AT1G76410 59.3 4.5e-42 168.3
Car05g00592 . 49 458 C3H Transcription Factor Family AT1G80400 53.6 3.1e-112 402.5
Car12g00287 . 1 411 C3H Transcription Factor Family AT1G80400 51.8 1.1e-109 394.0
Car06g00141 . 2 132 C3H Transcription Factor Family AT2G17450 62.2 9.5e-40 160.6
Car08g00187 CST 72 560 C3H Transcription Factor Family AT2G31510 75.9 1.2e-227 786.2
Car17g00550 CST 129 610 C3H Transcription Factor Family AT2G31510 76.4 6.7e-226 780.4
Car12g00952 . 127 449 C3H Transcription Factor Family AT2G31510 78.0 1.6e-163 573.2
Car03g01008 . 7 168 C3H Transcription Factor Family AT2G35910 64.8 1.4e-53 206.8
Car07g00808 . 7 171 C3H Transcription Factor Family AT2G35910 54.4 8.8e-45 177.6
Car14g00339 . 13 163 C3H Transcription Factor Family AT2G35910 54.8 1.3e-43 173.7
Car03g00093 . 3 309 C3H Transcription Factor Family AT2G41980 81.1 5.7e-151 530.8
Car07g01244 . 1 306 C3H Transcription Factor Family AT2G41980 80.5 1.4e-149 526.2
Car16g00044 CST 61 318 C3H Transcription Factor Family AT2G41980 81.0 3.6e-129 458.4
Car18g01246 CST 61 318 C3H Transcription Factor Family AT2G41980 80.6 1.1e-128 456.8
Car18g00793 . 34 305 C3H Transcription Factor Family AT2G41980 76.3 1.7e-126 449.5
Car04g01415 . 48 305 C3H Transcription Factor Family AT2G41980 79.1 1.1e-125 446.8
Car15g00770 . 88 345 C3H Transcription Factor Family AT2G41980 78.7 3.2e-125 445.3
Car17g00506 . 43 301 C3H Transcription Factor Family AT2G41980 75.7 5.1e-123 438.0
Car04g02137 . 123 385 C3H Transcription Factor Family AT2G41980 76.0 4.7e-121 431.4
Car08g00096 . 44 302 C3H Transcription Factor Family AT2G41980 73.4 4.0e-120 428.3
Car14g01510 CST 121 394 C3H Transcription Factor Family AT3G06140 61.5 3.2e-92 335.9
Car06g01236 CST 107 381 C3H Transcription Factor Family AT3G06140 60.3 9.3e-92 334.3
Car14g00184 CST 34 331 C3H Transcription Factor Family AT3G09770 60.4 4.5e-88 322.0
Car06g00323 CST 33 329 C3H Transcription Factor Family AT3G09770 58.7 3.6e-85 312.4
Car11g01267 . 132 698 C3H Transcription Factor Family AT3G26730 54.3 7.0e-163 571.6
Car10g00121 CCT,CST 116 409 C3H Transcription Factor Family AT3G47990 71.0 1.6e-124 443.0
Car11g00100 CCT,CST 90 400 C3H Transcription Factor Family AT3G47990 67.8 5.5e-122 434.5
Car18g00155 CCT,CST 58 291 C3H Transcription Factor Family AT3G47990 77.8 4.7e-113 404.8
Car13g00734 CCT,CST 73 360 C3H Transcription Factor Family AT3G47990 52.8 4.7e-89 325.1
Car01g01599 . 4 186 C3H Transcription Factor Family AT1G20823 56.3 3.9e-52 201.8
Car09g00029 . 4 186 C3H Transcription Factor Family AT1G20823 56.3 6.7e-52 201.1
Car06g00141 . 1 141 C3H Transcription Factor Family AT1G20823 63.6 3.0e-44 175.6
Car20g00755 . 30 413 C3H Transcription Factor Family AT3G18930 53.1 4.8e-84 308.9
Car06g00112 . 20 235 C3H Transcription Factor Family AT5G66070 73.1 4.1e-74 275.0
Car16g01185 . 20 195 C3H Transcription Factor Family AT5G66070 71.0 1.7e-51 199.9
Car06g00286 . 1 262 C3H Transcription Factor Family AT5G02750 53.5 3.1e-66 249.2
Car10g00236 CST 5 485 C3H Transcription Factor Family AT1G73950 69.9 3.8e-196 681.4
Car11g00236 CST 5 481 C3H Transcription Factor Family AT1G73950 65.0 1.6e-175 612.8
Car04g01965 . 12 467 C3H Transcription Factor Family AT1G73950 60.8 2.8e-159 558.9
Car09g01077 CCT 3 144 C3H Transcription Factor Family AT1G33480 59.9 3.1e-44 176.0
Car01g00804 CCT 1 155 C3H Transcription Factor Family AT1G33480 50.3 2.8e-37 152.9
Car16g00969 CCT,CST 60 269 C3H Transcription Factor Family AT2G01735 54.2 2.3e-52 203.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002467 0 5 1 1 1 2 4 2 2 2 1 2 2 1 2 3 1 1 3 2 2 2 2 2 2 1 1 7 3 1 61
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00100 Car_Chr11 FPKM 1.504762 2.243594 2.777148 1.806636 0.0 1.064871 1.623401 2.067912 1.29008 2.969064