Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00102 ATGCTGCTGGACAAAACACGTACGGTTAAAATTGCTGATTTTGGCGTTGCTAGAGTTGAGGCCTCAAATCCCAACGACATGACCGGGGAGACTGGGACACTTGGTTACATGGCTCCTGAGGTTCTCAATGGCAACCCATATAACAGGAAGTGTGACGTGTACAGTTTCGGTATCTGCCTTTGGGAAATTTATTGCTGTGACATGCCATATCCCGACCTTAGTTTCTCCGAAGTGACTTCTGCTGTGGTTCGTCAGAATCTGAGGCCAGAGATACCGAGATGTTGCCCGAGCTCTCTAGCAAATGTGATGAAGCGATGCTGGGATGCAACCCCGGACAAGCGGCCCGAGATGGACGAAGTAGTTTCCATGTTGGAGGCCATTGACACATCCAAGGGTGGAGGTATGATCCCTGTTGATCAAACTCAAGGTTGTCTATGCTTTCGAAAATATAGAGGGCCTTAA 462 48.7 MLLDKTRTVKIADFGVARVEASNPNDMTGETGTLGYMAPEVLNGNPYNRKCDVYSFGICLWEIYCCDMPYPDLSFSEVTSAVVRQNLRPEIPRCCPSSLANVMKRCWDATPDKRPEMDEVVSMLEAIDTSKGGGMIPVDQTQGCLCFRKYRGP 153
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 582708 583661 + Carg18138-RA Car11g00102 156055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00102 153 ProSiteProfiles Protein kinase domain profile. 1 127 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car11g00102 153 Pfam Protein tyrosine and serine/threonine kinase 2 124 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00102 Car-Chr11:582708 Car11g01379 Car-Chr11:11265175 4.22E-111 dispersed
Car10g00124 Car-Chr10:585232 Car11g00102 Car-Chr11:582708 2.28E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89157 PF07714 PK_Tyr_Ser-Thr 7.60E-33 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00102 - - csv:101209182 325.094