Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00103 ATGGCTGCTCGGAGAGGAATCTGTTCTTTACTATCTCGTTCTCTGTTATCATCTTCTTGTTCTTCTTCTTCTTCTTGTTCTTCTGGTTATGGGTTTGGTTCTTTTCTCCAATCTCGTGGGAGAGTTTCAAGGTTGCATGGAATAGGGAGAAGATTCAGCTCATCTGCTTTGGCGGAGGAGGAACTTGTTACTCCTCCTGTTCAGATAAGTTACACTCAGAATCTGATTAATGGGCAGTTTGTGGATGCTGCATCAGGGAAAACGTTTCCGACCTACGATCCTCGCACCGGGGAAGTGATTGCTCATGTTGCCGAGGGCGAGGCGGAGGATATCAACCGGGCAGTATCGGCAGCTCGCAAGGCTTTCGACGAGGGGAAATGGCCGAAAATGACTGCTTATGAACGATCGAGGATATTACTGCGGTTCGCTGATTTGGTTGAGAAGCATAGCGCTGAGCTTGCAGCATTGGAGACATGGAACAATGGCAAACCTTATGAACAATCGGCTCGGACCGAAATACCTATATTCGTGCGCTTGTTTCACTATTACGCCGGGTGGGCGGACAAAATCCATGGCTTGACCGTTCCAGCTGATGGGAAATATCATGTGCAAGTATTACATGAACCAATTGGAGTTGCAGGACAGATAATTCCATGGAACTTTCCTCTCCTTATGTTTGCTTGGAAAGTTGGTCCTGCTCTAGCCTGTGGCAACACCATTGTCCTAAAAACTGCAGAGCAAACGCCTCTGACCGCTCTTTATGTCGCGAAGTTATTCCACGAGGCTGGTCTTCCTCCAGGAGTTCTGAATGTCGTTTCGGGCTATGGTCCAACCGCGGGTGCTGCCCTTGCTAGCCATATGGATGTGGACAAGCTAGCCTTTACAGGATCGACGAACACGGGAAAAGTTGTGCTCGAATTGGCATCTAAAAGCAATTTGAAACCGGTAACGCTCGAACTTGGAGGGAAATCGCCTTTCATCGTTTGTGAGGATGCAGATGTTGATAAGGCCGTAGAGCTTGCTCATTTTGCTCTTTTTTTCAATCAGGGGCAATGTTGCTGTGCTGGATCTCGTACTTTCGTGCATGAGCGTATATACGACGAGTTTGTCGAGAAGTCGAGGGCACGTGCCCAAAGACGTGTGGTTGGTGATCCTTTCAAGAAGGGTGTTGAACAAGGTCCTCAGATCGACTCGGAGCAGTTTGCAAAAGTCCTAAGATACATAAAATCTGGCATTGAAAGTGATGCTACTTTGGAATGTGGGGGTGACAGACTTGGGTCCAAGGGATACTTCGTCCAGCCGACAGTTTTCTCAAATGTTAAGGACGATATGTTGATAGCGAAGGACGAAATCTTTGGCCCAGTACAATCCATCTTGAAATTCAAGGACATTGACGAAGTTATTCAAAGGGCAAACGCAACTCGTTACGGTCTAGCTGCTGGAGTTTTCACTACAAACCTCGACACAGCTAACACCATAACACGAGGATTGAGAACAGGGACGGTGTGGGTGAATTGCTTCGATGTATTTGACGCTGCAATACCGTTTGGTGGGTATAAGATGAGCGGAATGGGGAGGGAGAAAGGAATTTACAGCCTCCAAAACTACTTGCAGGTGAAGGCTGTAGTTACTCCTCTGAAGAATCCAGCATGGTTATGA 1659 47.38 MAARRGICSLLSRSLLSSSCSSSSSCSSGYGFGSFLQSRGRVSRLHGIGRRFSSSALAEEELVTPPVQISYTQNLINGQFVDAASGKTFPTYDPRTGEVIAHVAEGEAEDINRAVSAARKAFDEGKWPKMTAYERSRILLRFADLVEKHSAELAALETWNNGKPYEQSARTEIPIFVRLFHYYAGWADKIHGLTVPADGKYHVQVLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTNTGKVVLELASKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERIYDEFVEKSRARAQRRVVGDPFKKGVEQGPQIDSEQFAKVLRYIKSGIESDATLECGGDRLGSKGYFVQPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIDEVIQRANATRYGLAAGVFTTNLDTANTITRGLRTGTVWVNCFDVFDAAIPFGGYKMSGMGREKGIYSLQNYLQVKAVVTPLKNPAWL 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 583895 587197 - Carg18139-RA Car11g00103 156056

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00103 552 CDD ALDH_F2BC 69 544 - -
Car11g00103 552 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 48 552 - -
Car11g00103 552 SUPERFAMILY ALDH-like 68 546 IPR016161 GO:0016491
Car11g00103 552 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 318 325 IPR029510 GO:0016491
Car11g00103 552 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 86 542 IPR016162 GO:0016491
Car11g00103 552 Pfam Aldehyde dehydrogenase family 80 542 IPR015590 GO:0016491
Car11g00103 552 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Car11g00103 552 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 324 513 IPR016163 GO:0016620
Car11g00103 552 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 48 552 - -
Car11g00103 552 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 346 357 IPR016160 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00103 K00128 ALDH; aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] - csv:101209430 976.467
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00487 Car-Chr2:3781178 Car11g00103 Car-Chr11:583895 3.88E-67 dispersed
Car11g00103 Car-Chr11:583895 Car12g00001 Car-Chr12:9331 0 dispersed
Car12g01124 Car-Chr12:10948062 Car11g00103 Car-Chr11:583895 5.88E-58 dispersed
Car13g00771 Car-Chr13:8617992 Car11g00103 Car-Chr11:583895 7.05E-12 dispersed
Car11g00103 Car-Chr11:583895 Car05g00003 Car-Chr5:17714 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g722 . . . . Bpe12g00589 . . . . . . Cma11g00104 . Car11g00103 Sed12g1882 . Cpe04g01548 Bhi02g00432 Tan09g2233 Cmetu05g1877 . Hepe09g0192 . . Cla06g01654 Cam06g1838 Cec06g1889 Cco06g1894 Clacu06g1798 Cmu06g1740 Cre06g2558 . . Cone13ag0133 . . . . . . . . . . . . . . . Cmo11g00105 . . . . . . . . . . . . . . . . . . . . Lsi06g01544 Csa01g00160 Chy02g02570 Cme02g01959
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g00477 . 6 516 Aldehyde Dehydrogenase Gene Family AT3G24503 66.7 1.3e-205 713.0
Car10g00560 . 1 457 Aldehyde Dehydrogenase Gene Family AT3G24503 65.9 4.8e-187 651.4
Car12g00001 . 34 535 Aldehyde Dehydrogenase Gene Family AT3G24503 53.9 9.4e-159 557.4
Car11g00103 . 68 552 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 4.1e-154 542.0
Car11g00103 . 1 552 Aldehyde Dehydrogenase Gene Family AT3G48000 78.6 3.6e-257 884.4
Car12g00001 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 77.0 9.5e-250 859.8
Car05g00003 . 1 545 Aldehyde Dehydrogenase Gene Family AT3G48000 68.0 2.6e-223 771.9
Car11g00477 . 17 516 Aldehyde Dehydrogenase Gene Family AT3G48000 51.6 8.8e-155 544.3
Car10g00560 . 18 457 Aldehyde Dehydrogenase Gene Family AT3G48000 51.6 7.3e-141 498.0
Car12g00001 . 1 379 Aldehyde Dehydrogenase Gene Family AT1G23800 76.8 4.8e-169 591.3
Car11g00103 . 1 396 Aldehyde Dehydrogenase Gene Family AT1G23800 72.2 5.8e-167 584.3
Car05g00003 . 1 389 Aldehyde Dehydrogenase Gene Family AT1G23800 66.6 2.0e-146 516.2
Car11g00477 . 17 360 Aldehyde Dehydrogenase Gene Family AT1G23800 52.3 4.0e-99 359.0
Car04g01154 . 83 543 Aldehyde Dehydrogenase Gene Family AT4G34240 62.0 1.8e-168 589.7
Car09g00694 . 14 338 Aldehyde Dehydrogenase Gene Family AT4G34240 59.6 1.3e-118 424.1
Car02g01035 . 4 185 Aldehyde Dehydrogenase Gene Family AT4G34240 50.5 3.3e-45 180.3
Car04g01154 . 144 541 Aldehyde Dehydrogenase Gene Family AT1G44170 68.1 2.5e-165 578.9
Car09g00694 . 10 338 Aldehyde Dehydrogenase Gene Family AT1G44170 64.6 7.0e-131 464.5
Car02g01034 . 1 282 Aldehyde Dehydrogenase Gene Family AT1G44170 50.4 8.4e-76 281.6
Car16g00681 . 47 524 Aldehyde Dehydrogenase Gene Family AT4G36250 61.3 3.8e-181 631.7
Car02g01034 . 1 284 Aldehyde Dehydrogenase Gene Family AT4G36250 60.9 5.6e-100 362.1
Car20g00250 . 39 551 Aldehyde Dehydrogenase Gene Family AT1G79440 75.2 3.4e-228 788.1
Car02g00487 . 2 289 Aldehyde Dehydrogenase Gene Family AT1G79440 78.5 8.7e-131 464.5
Car11g01168 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 84.6 2.7e-245 845.1
Car03g00775 . 211 714 Aldehyde Dehydrogenase Gene Family AT2G14170 59.4 1.9e-166 583.2
Car10g00142 . 35 525 Aldehyde Dehydrogenase Gene Family AT1G74920 76.2 6.5e-229 790.4
Car10g00142 . 35 525 Aldehyde Dehydrogenase Gene Family AT3G48170 76.6 2.7e-230 795.0
Car12g01124 . 39 534 Aldehyde Dehydrogenase Gene Family AT2G24270 89.9 6.1e-267 916.8
Car13g00771 . 32 554 Aldehyde Dehydrogenase Gene Family AT5G62530 80.7 3.5e-263 904.4
Car17g00339 CST 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 77.2 7.0e-278 953.4
Car08g01144 CST 1 588 Aldehyde Dehydrogenase Gene Family AT3G66658 74.1 8.3e-271 929.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001596 2 4 2 1 4 2 3 2 2 1 2 2 3 1 2 3 2 3 3 2 2 3 2 2 2 2 2 2 3 5 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00103 Car_Chr11 FPKM 18.830078 19.21505 13.689797 14.587893 16.077818 15.562628 16.867245 13.411368 15.356602 15.148168