Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00103 ATGGCTGCTCGGAGAGGAATCTGTTCTTTACTATCTCGTTCTCTGTTATCATCTTCTTGTTCTTCTTCTTCTTCTTGTTCTTCTGGTTATGGGTTTGGTTCTTTTCTCCAATCTCGTGGGAGAGTTTCAAGGTTGCATGGAATAGGGAGAAGATTCAGCTCATCTGCTTTGGCGGAGGAGGAACTTGTTACTCCTCCTGTTCAGATAAGTTACACTCAGAATCTGATTAATGGGCAGTTTGTGGATGCTGCATCAGGGAAAACGTTTCCGACCTACGATCCTCGCACCGGGGAAGTGATTGCTCATGTTGCCGAGGGCGAGGCGGAGGATATCAACCGGGCAGTATCGGCAGCTCGCAAGGCTTTCGACGAGGGGAAATGGCCGAAAATGACTGCTTATGAACGATCGAGGATATTACTGCGGTTCGCTGATTTGGTTGAGAAGCATAGCGCTGAGCTTGCAGCATTGGAGACATGGAACAATGGCAAACCTTATGAACAATCGGCTCGGACCGAAATACCTATATTCGTGCGCTTGTTTCACTATTACGCCGGGTGGGCGGACAAAATCCATGGCTTGACCGTTCCAGCTGATGGGAAATATCATGTGCAAGTATTACATGAACCAATTGGAGTTGCAGGACAGATAATTCCATGGAACTTTCCTCTCCTTATGTTTGCTTGGAAAGTTGGTCCTGCTCTAGCCTGTGGCAACACCATTGTCCTAAAAACTGCAGAGCAAACGCCTCTGACCGCTCTTTATGTCGCGAAGTTATTCCACGAGGCTGGTCTTCCTCCAGGAGTTCTGAATGTCGTTTCGGGCTATGGTCCAACCGCGGGTGCTGCCCTTGCTAGCCATATGGATGTGGACAAGCTAGCCTTTACAGGATCGACGAACACGGGAAAAGTTGTGCTCGAATTGGCATCTAAAAGCAATTTGAAACCGGTAACGCTCGAACTTGGAGGGAAATCGCCTTTCATCGTTTGTGAGGATGCAGATGTTGATAAGGCCGTAGAGCTTGCTCATTTTGCTCTTTTTTTCAATCAGGGGCAATGTTGCTGTGCTGGATCTCGTACTTTCGTGCATGAGCGTATATACGACGAGTTTGTCGAGAAGTCGAGGGCACGTGCCCAAAGACGTGTGGTTGGTGATCCTTTCAAGAAGGGTGTTGAACAAGGTCCTCAGATCGACTCGGAGCAGTTTGCAAAAGTCCTAAGATACATAAAATCTGGCATTGAAAGTGATGCTACTTTGGAATGTGGGGGTGACAGACTTGGGTCCAAGGGATACTTCGTCCAGCCGACAGTTTTCTCAAATGTTAAGGACGATATGTTGATAGCGAAGGACGAAATCTTTGGCCCAGTACAATCCATCTTGAAATTCAAGGACATTGACGAAGTTATTCAAAGGGCAAACGCAACTCGTTACGGTCTAGCTGCTGGAGTTTTCACTACAAACCTCGACACAGCTAACACCATAACACGAGGATTGAGAACAGGGACGGTGTGGGTGAATTGCTTCGATGTATTTGACGCTGCAATACCGTTTGGTGGGTATAAGATGAGCGGAATGGGGAGGGAGAAAGGAATTTACAGCCTCCAAAACTACTTGCAGGTGAAGGCTGTAGTTACTCCTCTGAAGAATCCAGCATGGTTATGA 1659 47.38 MAARRGICSLLSRSLLSSSCSSSSSCSSGYGFGSFLQSRGRVSRLHGIGRRFSSSALAEEELVTPPVQISYTQNLINGQFVDAASGKTFPTYDPRTGEVIAHVAEGEAEDINRAVSAARKAFDEGKWPKMTAYERSRILLRFADLVEKHSAELAALETWNNGKPYEQSARTEIPIFVRLFHYYAGWADKIHGLTVPADGKYHVQVLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTIVLKTAEQTPLTALYVAKLFHEAGLPPGVLNVVSGYGPTAGAALASHMDVDKLAFTGSTNTGKVVLELASKSNLKPVTLELGGKSPFIVCEDADVDKAVELAHFALFFNQGQCCCAGSRTFVHERIYDEFVEKSRARAQRRVVGDPFKKGVEQGPQIDSEQFAKVLRYIKSGIESDATLECGGDRLGSKGYFVQPTVFSNVKDDMLIAKDEIFGPVQSILKFKDIDEVIQRANATRYGLAAGVFTTNLDTANTITRGLRTGTVWVNCFDVFDAAIPFGGYKMSGMGREKGIYSLQNYLQVKAVVTPLKNPAWL 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 583895 587197 - Carg18139-RA Car11g00103 156056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00103 552 CDD ALDH_F2BC 69 544 - -
Car11g00103 552 PANTHER ALDEHYDE DEHYDROGENASE FAMILY 2 MEMBER B4, MITOCHONDRIAL 48 552 - -
Car11g00103 552 SUPERFAMILY ALDH-like 68 546 IPR016161 GO:0016491
Car11g00103 552 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 318 325 IPR029510 GO:0016491
Car11g00103 552 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 86 542 IPR016162 GO:0016491
Car11g00103 552 Pfam Aldehyde dehydrogenase family 80 542 IPR015590 GO:0016491
Car11g00103 552 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Car11g00103 552 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 324 513 IPR016163 GO:0016620
Car11g00103 552 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 48 552 - -
Car11g00103 552 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 346 357 IPR016160 GO:0016491
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car02g00487 Car-Chr2:3781178 Car11g00103 Car-Chr11:583895 3.88E-67 dispersed
Car11g00103 Car-Chr11:583895 Car12g00001 Car-Chr12:9331 0 dispersed
Car12g01124 Car-Chr12:10948062 Car11g00103 Car-Chr11:583895 5.88E-58 dispersed
Car13g00771 Car-Chr13:8617992 Car11g00103 Car-Chr11:583895 7.05E-12 dispersed
Car11g00103 Car-Chr11:583895 Car05g00003 Car-Chr5:17714 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00103 K00128 - csv:101209430 976.467