Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00104 ATGAAACTATACACCGAGGCCACCGATGGCTCGTCCATAGAGCCCAAGGACAGTGCCTTAGTATGGCATCATCGAGACGCCGATCCATGTTTCGGTTCATGTCAGGCCATGGAGCTCTTAGATCACCTTGAAAATGTTCTTGCTAACGAACCCGTAGTCGTCAAAAGAGGCCACCAGATCGTCGAAGTGAAACCACAGGGTGTGACTAAAGGATTAGTTGCTGAAAGAGTTCTTTCCACTATGATCGCCTCTGATAAGGCGCCCGACTTTGTGATGTGCATCGGAGACGATCGATCCGATGAAGACATGTTCGAAAGCATATCATGTACAACCTATAGCTCATCCCTTGCTGTTCCTCCAAAGATATTTGCCTGTACTGTGGGGCAAAAGCCTAGCAAAGCCAAATACTATTTAGACGATACCACCGACGTTTTGACCGTACTTCAAAGCCTGGCCACCTCTACTAGCGGTAAACTGAGGTCAGAAGAGCCTCCTTCTTGTGAAGCGGATAAATCCAATTCTCTGTTGCCCACCACCAGCTGCGGTTGTTCTCGGCTATCGTGCTTCGGATCTCGCCGAACAGCCGCCGGCGGGCCGTCATGGTGGGAGCGGATTAGGGCGTCGGAGGTTCACAACGAGGGGCGCTGGTGGGCGCGAGGCGTTAGGGTTCTTTTGAAGCTCCGAGAGTGGTCGGAGATCGTCGCTGGACCGAGATGGAAGACTTTCATTCGCCGATTTAATCGGAATAGAAGTGGTGCTACTGCTGCTGCTAGGCCTGGAAAATTTCAATACGATCCGTTGAGTTACGCTATGAATTTCGACGAAGGCTCGGGGCAGATAGGGGAATTGGACGACGATATCGATGATTTCAGTGGATTTCGAAACTTCTCTGCTCGCTACGCTTCGATTCCGGGGTCGTTGAAGACTGCAGGAACCACTGTTTTGGGGAAGGATGCTCCTACCGTCGAGTAA 972 51.23 MKLYTEATDGSSIEPKDSALVWHHRDADPCFGSCQAMELLDHLENVLANEPVVVKRGHQIVEVKPQGVTKGLVAERVLSTMIASDKAPDFVMCIGDDRSDEDMFESISCTTYSSSLAVPPKIFACTVGQKPSKAKYYLDDTTDVLTVLQSLATSTSGKLRSEEPPSCEADKSNSLLPTTSCGCSRLSCFGSRRTAAGGPSWWERIRASEVHNEGRWWARGVRVLLKLREWSEIVAGPRWKTFIRRFNRNRSGATAAARPGKFQYDPLSYAMNFDEGSGQIGELDDDIDDFSGFRNFSARYASIPGSLKTAGTTVLGKDAPTVE 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 595269 597706 + Carg18140-RA Car11g00104 156057

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00104 323 Pfam Trehalose-phosphatase 1 141 IPR003337 GO:0003824|GO:0005992
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00104 K16055 TPS; trehalose 6-phosphate synthase/phosphatase [EC:2.4.1.15 3.1.3.12] - csv:101209676 284.263
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car11g00104 Car13g00740 CCT
Car11g00104 Car18g00150 CCT
Car11g00104 Car13g00740 ECH
Car11g00104 Car18g00150 ECH
Car10g00128 Car11g00104 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01747 Car-Chr4:10022884 Car11g00104 Car-Chr11:595269 1.29E-75 dispersed
Car09g00534 Car-Chr9:3012880 Car11g00104 Car-Chr11:595269 1.41E-06 dispersed
Car10g00128 Car-Chr10:606794 Car11g00104 Car-Chr11:595269 1.17E-89 dispersed
Car11g00104 Car-Chr11:595269 Car19g00792 Car-Chr19:8586811 3.73E-70 dispersed
Car12g00334 Car-Chr12:2113330 Car11g00104 Car-Chr11:595269 3.02E-06 dispersed
Car18g00415 Car-Chr18:2600958 Car11g00104 Car-Chr11:595269 6.78E-12 dispersed
Car10g00127 Car-Chr10:601967 Car11g00104 Car-Chr11:595269 2.69E-87 wgd
Car11g00104 Car-Chr11:595269 Car13g00740 Car-Chr13:8468553 2.59E-47 wgd
Car11g00104 Car-Chr11:595269 Car18g00150 Car-Chr18:815798 1.67E-38 wgd
Car11g00104 Car-Chr11:595269 Car04g02623 Car-Chr4:20474315 1.62E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g715 . Blo16g00216 . . . Bpe13g00255 Bma06g00207 . Cmo13g00927 . . . Car10g00128 Car11g00104 Sed08g0141 Cpe20g00228 Cpe04g01546 Bhi02g00422 Tan09g2227 Cmetu04g2397 . Hepe09g0189 . . Cla06g01650 . Cec06g1884 Cco06g1890 Clacu06g1794 Cmu06g1736 Cre06g2554 . . . . . Csa01g00834 Chy12g01284 Cme12g01709 Blo13g00050 . . . . . . Bma08g00173 Sed08g2493 Cmo10g00143 . Cma13g00900 Cma18g00157 Car13g00740 Car18g00150 Cpe09g01036 . Bhi08g01586 Tan05g2029 Cmetu12g1291 Lac10g0430 Hepe07g2242 . . Cla01g01284 Cam01g1444 Cec01g1482 Cco01g1445 Clacu01g1351 Cmu01g1255 Cre01g1281 . Csa01g00165 Chy02g02566 Cme02g01955
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car02g00661 . 49 481 Trehalose Biosynthesis Gene Families AT4G24040 55.6 2.5e-140 496.5
Car16g01107 . 1 962 Trehalose Biosynthesis Gene Families AT1G06410 58.5 0.0e+00 1103.2
Car10g00127 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.3 3.1e-303 1038.1
Car19g00792 . 1 242 Trehalose Biosynthesis Gene Families AT1G06410 78.5 2.4e-106 384.0
Car03g01201 . 1 245 Trehalose Biosynthesis Gene Families AT1G06410 72.2 5.0e-104 376.3
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT1G06410 64.9 1.5e-60 231.9
Car06g00576 . 97 271 Trehalose Biosynthesis Gene Families AT1G06410 66.7 1.3e-59 228.8
Car11g00104 CCT,CST,ECH 1 155 Trehalose Biosynthesis Gene Families AT1G06410 66.5 9.0e-53 206.1
Car01g01086 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 64.8 3.1e-242 835.1
Car18g00415 . 83 691 Trehalose Biosynthesis Gene Families AT1G16980 64.3 3.4e-241 831.6
Car10g00127 . 1 851 Trehalose Biosynthesis Gene Families AT1G23870 67.1 0.0e+00 1220.3
Car16g01107 . 1 961 Trehalose Biosynthesis Gene Families AT1G23870 54.9 3.8e-309 1057.7
Car03g01201 . 1 246 Trehalose Biosynthesis Gene Families AT1G23870 61.8 4.1e-85 313.5
Car19g00792 . 1 257 Trehalose Biosynthesis Gene Families AT1G23870 58.8 1.5e-82 305.1
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT1G23870 75.3 6.8e-72 269.6
Car06g00576 . 96 270 Trehalose Biosynthesis Gene Families AT1G23870 62.7 3.3e-58 224.2
Car11g00104 CCT,CST,ECH 1 156 Trehalose Biosynthesis Gene Families AT1G23870 69.2 3.6e-57 220.7
Car10g00127 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 66.7 0.0e+00 1211.4
Car16g01107 . 1 966 Trehalose Biosynthesis Gene Families AT1G60140 52.5 4.5e-302 1034.2
Car03g01201 . 1 250 Trehalose Biosynthesis Gene Families AT1G60140 60.0 1.7e-83 308.1
Car19g00792 . 1 246 Trehalose Biosynthesis Gene Families AT1G60140 60.2 3.2e-82 303.9
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT1G60140 71.3 1.7e-67 255.0
Car11g00104 CCT,CST,ECH 1 160 Trehalose Biosynthesis Gene Families AT1G60140 68.1 9.4e-58 222.6
Car06g00576 . 95 275 Trehalose Biosynthesis Gene Families AT1G60140 59.0 2.1e-57 221.5
Car16g01107 . 1 963 Trehalose Biosynthesis Gene Families AT1G68020 63.0 0.0e+00 1211.1
Car10g00127 . 1 837 Trehalose Biosynthesis Gene Families AT1G68020 61.7 0.0e+00 1081.6
Car19g00792 . 1 245 Trehalose Biosynthesis Gene Families AT1G68020 64.5 4.3e-87 320.1
Car03g01201 . 1 246 Trehalose Biosynthesis Gene Families AT1G68020 62.6 2.1e-86 317.8
Car06g00576 . 93 282 Trehalose Biosynthesis Gene Families AT1G68020 67.2 6.9e-69 259.6
Car04g01747 . 89 252 Trehalose Biosynthesis Gene Families AT1G68020 66.5 2.2e-59 228.0
Car11g00104 CCT,CST,ECH 1 155 Trehalose Biosynthesis Gene Families AT1G68020 67.1 2.8e-54 211.1
Car10g00127 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1106.3
Car16g01107 . 1 961 Trehalose Biosynthesis Gene Families AT1G70290 50.1 4.8e-269 924.5
Car03g01201 . 1 249 Trehalose Biosynthesis Gene Families AT1G70290 61.0 7.8e-86 315.8
Car19g00792 . 1 252 Trehalose Biosynthesis Gene Families AT1G70290 60.5 8.0e-83 305.8
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT1G70290 74.1 1.6e-70 265.0
Car06g00576 . 94 280 Trehalose Biosynthesis Gene Families AT1G70290 59.3 4.7e-59 226.9
Car11g00104 CCT,CST,ECH 1 156 Trehalose Biosynthesis Gene Families AT1G70290 68.6 9.9e-57 219.2
Car01g01086 . 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.0 0.0e+00 1464.9
Car18g00415 . 1 919 Trehalose Biosynthesis Gene Families AT1G78580 73.2 0.0e+00 1352.8
Car10g00127 . 27 839 Trehalose Biosynthesis Gene Families AT2G18700 59.5 2.3e-298 1021.9
Car16g01107 . 1 962 Trehalose Biosynthesis Gene Families AT2G18700 51.7 1.6e-283 972.6
Car03g01201 . 1 242 Trehalose Biosynthesis Gene Families AT2G18700 62.9 2.0e-79 294.7
Car19g00792 . 1 242 Trehalose Biosynthesis Gene Families AT2G18700 60.9 9.1e-77 285.8
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT2G18700 65.7 1.1e-58 225.7
Car06g00576 . 99 271 Trehalose Biosynthesis Gene Families AT2G18700 64.0 4.4e-55 213.8
Car11g00104 CCT,CST,ECH 1 157 Trehalose Biosynthesis Gene Families AT2G18700 63.9 1.0e-48 192.6
Car16g01107 . 1 957 Trehalose Biosynthesis Gene Families AT4G17770 69.2 0.0e+00 1320.1
Car10g00127 . 1 832 Trehalose Biosynthesis Gene Families AT4G17770 62.5 0.0e+00 1104.7
Car19g00792 . 5 250 Trehalose Biosynthesis Gene Families AT4G17770 59.3 2.9e-83 307.4
Car03g01201 . 5 238 Trehalose Biosynthesis Gene Families AT4G17770 62.0 1.4e-82 305.1
Car06g00576 . 98 266 Trehalose Biosynthesis Gene Families AT4G17770 78.4 2.5e-74 277.7
Car04g01747 . 88 263 Trehalose Biosynthesis Gene Families AT4G17770 62.5 1.3e-59 228.8
Car11g00104 CCT,CST,ECH 1 152 Trehalose Biosynthesis Gene Families AT4G17770 63.8 1.3e-51 202.2
Car01g01086 . 93 923 Trehalose Biosynthesis Gene Families AT4G27550 61.7 2.9e-300 1028.1
Car18g00415 . 87 913 Trehalose Biosynthesis Gene Families AT4G27550 60.3 1.6e-290 995.7
Car01g01086 . 1 926 Trehalose Biosynthesis Gene Families AT1G78580 78.0 0.0e+00 1464.9
Car18g00415 . 1 919 Trehalose Biosynthesis Gene Families AT1G78580 73.2 0.0e+00 1352.8
Car01g01086 . 85 696 Trehalose Biosynthesis Gene Families AT1G16980 64.8 3.1e-242 835.1
Car18g00415 . 83 691 Trehalose Biosynthesis Gene Families AT1G16980 64.3 3.4e-241 831.6
Car01g01086 . 93 621 Trehalose Biosynthesis Gene Families AT1G17000 62.2 8.5e-191 664.5
Car18g00415 . 78 606 Trehalose Biosynthesis Gene Families AT1G17000 60.3 1.4e-188 657.1
Car01g01086 . 93 923 Trehalose Biosynthesis Gene Families AT4G27550 61.7 2.9e-300 1028.1
Car18g00415 . 87 913 Trehalose Biosynthesis Gene Families AT4G27550 60.3 1.6e-290 995.7
Car16g01107 . 1 957 Trehalose Biosynthesis Gene Families AT4G17770 69.2 0.0e+00 1320.1
Car10g00127 . 1 832 Trehalose Biosynthesis Gene Families AT4G17770 62.5 0.0e+00 1104.7
Car19g00792 . 5 250 Trehalose Biosynthesis Gene Families AT4G17770 59.3 2.9e-83 307.4
Car03g01201 . 5 238 Trehalose Biosynthesis Gene Families AT4G17770 62.0 1.4e-82 305.1
Car06g00576 . 98 266 Trehalose Biosynthesis Gene Families AT4G17770 78.4 2.5e-74 277.7
Car04g01747 . 88 263 Trehalose Biosynthesis Gene Families AT4G17770 62.5 1.3e-59 228.8
Car11g00104 CCT,CST,ECH 1 152 Trehalose Biosynthesis Gene Families AT4G17770 63.8 1.3e-51 202.2
Car16g01107 . 1 963 Trehalose Biosynthesis Gene Families AT1G68020 63.0 0.0e+00 1211.1
Car10g00127 . 1 837 Trehalose Biosynthesis Gene Families AT1G68020 61.7 0.0e+00 1081.6
Car19g00792 . 1 245 Trehalose Biosynthesis Gene Families AT1G68020 64.5 4.3e-87 320.1
Car03g01201 . 1 246 Trehalose Biosynthesis Gene Families AT1G68020 62.6 2.1e-86 317.8
Car06g00576 . 93 282 Trehalose Biosynthesis Gene Families AT1G68020 67.2 6.9e-69 259.6
Car04g01747 . 89 252 Trehalose Biosynthesis Gene Families AT1G68020 66.5 2.2e-59 228.0
Car11g00104 CCT,CST,ECH 1 155 Trehalose Biosynthesis Gene Families AT1G68020 67.1 2.8e-54 211.1
Car16g01107 . 1 962 Trehalose Biosynthesis Gene Families AT1G06410 58.5 0.0e+00 1103.2
Car10g00127 . 1 837 Trehalose Biosynthesis Gene Families AT1G06410 59.3 3.1e-303 1038.1
Car19g00792 . 1 242 Trehalose Biosynthesis Gene Families AT1G06410 78.5 2.4e-106 384.0
Car03g01201 . 1 245 Trehalose Biosynthesis Gene Families AT1G06410 72.2 5.0e-104 376.3
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT1G06410 64.9 1.5e-60 231.9
Car06g00576 . 97 271 Trehalose Biosynthesis Gene Families AT1G06410 66.7 1.3e-59 228.8
Car11g00104 CCT,CST,ECH 1 155 Trehalose Biosynthesis Gene Families AT1G06410 66.5 9.0e-53 206.1
Car10g00127 . 1 851 Trehalose Biosynthesis Gene Families AT1G70290 63.6 0.0e+00 1106.3
Car16g01107 . 1 961 Trehalose Biosynthesis Gene Families AT1G70290 50.1 4.8e-269 924.5
Car03g01201 . 1 249 Trehalose Biosynthesis Gene Families AT1G70290 61.0 7.8e-86 315.8
Car19g00792 . 1 252 Trehalose Biosynthesis Gene Families AT1G70290 60.5 8.0e-83 305.8
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT1G70290 74.1 1.6e-70 265.0
Car06g00576 . 94 280 Trehalose Biosynthesis Gene Families AT1G70290 59.3 4.7e-59 226.9
Car11g00104 CCT,CST,ECH 1 156 Trehalose Biosynthesis Gene Families AT1G70290 68.6 9.9e-57 219.2
Car10g00127 . 1 851 Trehalose Biosynthesis Gene Families AT1G23870 67.1 0.0e+00 1220.3
Car16g01107 . 1 961 Trehalose Biosynthesis Gene Families AT1G23870 54.9 3.8e-309 1057.7
Car03g01201 . 1 246 Trehalose Biosynthesis Gene Families AT1G23870 61.8 4.1e-85 313.5
Car19g00792 . 1 257 Trehalose Biosynthesis Gene Families AT1G23870 58.8 1.5e-82 305.1
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT1G23870 75.3 6.8e-72 269.6
Car06g00576 . 96 270 Trehalose Biosynthesis Gene Families AT1G23870 62.7 3.3e-58 224.2
Car11g00104 CCT,CST,ECH 1 156 Trehalose Biosynthesis Gene Families AT1G23870 69.2 3.6e-57 220.7
Car10g00127 . 1 848 Trehalose Biosynthesis Gene Families AT1G60140 66.7 0.0e+00 1211.4
Car16g01107 . 1 966 Trehalose Biosynthesis Gene Families AT1G60140 52.5 4.5e-302 1034.2
Car03g01201 . 1 250 Trehalose Biosynthesis Gene Families AT1G60140 60.0 1.7e-83 308.1
Car19g00792 . 1 246 Trehalose Biosynthesis Gene Families AT1G60140 60.2 3.2e-82 303.9
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT1G60140 71.3 1.7e-67 255.0
Car11g00104 CCT,CST,ECH 1 160 Trehalose Biosynthesis Gene Families AT1G60140 68.1 9.4e-58 222.6
Car06g00576 . 95 275 Trehalose Biosynthesis Gene Families AT1G60140 59.0 2.1e-57 221.5
Car10g00127 . 27 839 Trehalose Biosynthesis Gene Families AT2G18700 59.5 2.3e-298 1021.9
Car16g01107 . 1 962 Trehalose Biosynthesis Gene Families AT2G18700 51.7 1.6e-283 972.6
Car03g01201 . 1 242 Trehalose Biosynthesis Gene Families AT2G18700 62.9 2.0e-79 294.7
Car19g00792 . 1 242 Trehalose Biosynthesis Gene Families AT2G18700 60.9 9.1e-77 285.8
Car04g01747 . 80 252 Trehalose Biosynthesis Gene Families AT2G18700 65.7 1.1e-58 225.7
Car06g00576 . 99 271 Trehalose Biosynthesis Gene Families AT2G18700 64.0 4.4e-55 213.8
Car11g00104 CCT,CST,ECH 1 157 Trehalose Biosynthesis Gene Families AT2G18700 63.9 1.0e-48 192.6
Car02g00661 . 49 481 Trehalose Biosynthesis Gene Families AT4G24040 55.6 2.5e-140 496.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002584 1 2 2 2 1 1 4 2 2 2 2 2 3 2 2 2 2 2 3 2 2 2 2 1 2 0 2 4 2 1 59
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00104 Car_Chr11 FPKM 4.559182 4.855111 1.473627 1.538185 6.148711 8.002777 7.807132 0.552474 0.235474 0.432624