Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00107 ATGTTTCTGACACGAATATTTGGGCGGACATTTCTAGCTGCTGCTAGATCAGAAACTTCTGCTGCTACAGCTGCTGCTGGCTCTACAGCTAGGACAGGGTACAATCCGCTCGAGGAGTTTTTTGAGGCACATAGAAGTCCAGACGATGACAAACCTGTTGTATATGGTCGAAGTTGGAAGGCTTCAGAACTGCGGCTCAAGTCTTGGGACGATCTTAACAAGTTATGGTATGTCCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGGCAGATGCTTAACGCACAAAATCTAAGGTTTCCTAATCCAGAACGCATTCCCAAGGTGAGGAAGTCAATGTGTCGAATCAAACAGGTACTTACGGAGAGAGCCATCGATGAACCAGATCCTCGGAGATCCGCAGAGATGAAGAGGATGGAGTCTAATCTAGTTTTAACGACGATATTGGAAGATTTGGAGATGGTTATGAATTGTGGGAACGTGATGATGGAGAAGATTATTGTAGAAGATTTAGATGTGATGTGTGTGCTGAAAATGAAAGAGTTGACAAAGAAAAAAGGGGGAAATAATGATGGTTTGATGTTGTTGTGTTGGGAAAATGAGAGGTTTCTCGGTAAGCGGATAGTTTTGAATTGCCTATCGTCTGATGAATTAGGGTTAGGATTGATGGTACTCGTTCGGCGTGAAGGTGGGATCGAGGTTGGAATTGGGGAAAATGCAAGGCTATGCATGGGCGTCGAGGGTGGACGTAGGATTAGTGTTGGTGATTGTGCTCTTTTCAAACCCCCCAAAGACTCCCCACCTTTTATTGGCATAATCCGGTGGTTGACTACTGGTAAGGAGAATAAATTGAAGTTGGGTGTGAATTGGCTTTATCGATCTTCTGAATTAAAGCTCGGCAAAGGCATCCTTTTGGAAGCTGCGCCCAACGAAGTATTCTATTCCTTTCACAAGGATGAAATTCCTGCTGCATCTTTACTCCACCCGTGTAAAGTTGCATTCCTTCCTAAGGACATCAAACTTCCATCAGGAATTTCGTCATTTGTGTGCCGGAGAGTGTATGACATAAGGAAGAAGTGTTTATGGTGGCTAACTGATCAGGATTATATTAATGAACATCGGGAAGAAGTGGATCAATTATTAGACAAGACGAGGTTAGAAATGCATGCTTCAGTCCAACCTGGTGGCCGATCACCTAAGCCTACTAGTGGTCCAACATCAACATCTCAGTTAAAAGCTAATTCAGATGGTGTTCAAGCCACCTTTCCTTCTCACACGAAAGGCAAGAAAAGAGAGAGGAGTGACCAGGGATTAGAATCTGTTAAACGTGAACGCATCGTAAAAGCTGATGAAGGGGATTCTGCTACCTGCAGATTGGAAAATACTTTAAAGTTTGAGATCACAAAAATTGCTGAAAAAGGAAGCTTAGTTGATTCTGAAGCTGTAGAGAAATTGGTGCAGCTTATGCTGTCTGATAGTGACAAAAAAATTGATTTGGCTGGCAGATCAGCACTTGCAGGTGTGATAGCTGCCACAGATAAGGTTGAGTGCCTTAATCAGTTTGTGCATCTTAAGGGTTTACCTGTGCTTGATGAATGGCTCCAAGAGGTTCACAAGGGAAAAATTGGCAGTGGCAGTAGCCCCAAGGATAGCGATAAAGCAGTTGAGGAATTTCTACTGATTTTGCTTCGAGCCCTTGATAAACTACCTGTAAATCTTCCTGCTTTGCAGATGTGCCATATTGGAAAGTCTGTGAATCATTTACGCTCACATAAGAACTTGGAAATTCAGAAGAAAGCAAGGAGCTTAGTGGACACATGGAAAAAACGCGTTGAAGCTGAAATGAACATTAATGATGCAAAGTCTGGTTCAAACCAAGCTGTTGCATGGAGTGCAAGAACTCGATCATCCGAAGTTGCTCATGGTGGGAGGAACCAAGATGCATCCTCTGAAGTTGCCATGAAGAGCTCGGTTTCTCAGCTTTCTACATCCAAATCTGCTTCAGTTAAGCTTGCTCAGGATGATAGTGTTACAAGATCTGCATCTGCCTCTCCTGGTTCTATGAAACCAGTTTTATCACCCGCATCAGCAAGTATTAACTCAAAAGATGGATCATCCAGAAATCCTGGTGTTTGTGGCACAGCTGATCTTTCTCAAACTATTGCCAGGGATGAAAAGAGTAGCAGTTCCAGTCAGTCCCATAATAATAGTCAATCTTGTTCTAGCGAACATGGTAAAAGTGGTGGTTTAGGGAAGGAGGATGCCAGAAGCTCTACTGCTGGTTCAATGAGTGTGAATAAGATCTCAGGTGGTGGATCTCGACAGCGCAAATCAGTCAATGGATTTCCTAGCACTGTTCTCTCCGGGGCTCAACGAGATGTAGGGTCAGGAAAAAGTTCTTTGCACCGAAACACAGTTTTAGAGAGATCATCACAATCGGGAACGACCTATGAAAAGGCATCTGATGGACCTATTGGTGAGGGAAACAGTCCTAAATTGATAGTTAAGATCACCAATCGTGGCCGGAGTCCTGCACACAGTGTTAGTGGTGGATCGTTTGAAGATCCTTCAATAATGAATAGCAGGGCTTCTTCTCCTCCACTTTCAGAGAAGCATGATCAATTTGATCACAGTAAGAGTGATACCTGTCAGCCTAATATTACTGGAGATGTGAATGTCGAGTCCTGGCAGAATAGTGATGTAAAGGATATGGTGACCGGCTCTGATGATGGCGATGGATCTCCTGCTGCTGTACATGGTGAAGATCGATGTCAGGCTGTTGAGGACATAAAAGTTTCAAGGGCGAATGATCATAAAAATGGGAAGTTACATGAAGCTTCTTTGAGCTCCATAAATGCTTTAATTGAGAGTTGTATTAAATGCTCCGAAGCTAGTATGCCTACCTCACTCATGGATAATGTTGGAATCAATTTACTTGCTAGTGTAGCTGCCGTTGAGATGTCGAAGTCTGATTTTGTTTTGCCTTCTGATACACAAGGAAATATCACTGCAGTTGACCGAACCTCCAGAAGCAGTGATTGTAAAGTTAAAGCATCTTATCCTGAAGAGGAAGCTAGAGATCACATCCAGTCAAATGATGCTATGGATGTTCCTGAGCAGGGCGTGATCACTACTTCTTTTGGAGCTAAAATTGTGGATGGAAGGTGTGCTTCACAATCTGAAGAGAAACCGGTTGGAGATTTGAGTGGTCATTCAAAATCATCTGGTGTAAATTTGCAACCAACTGCTGTGCCATTTCCAGATGGTTGTATAAAAATGAACGAGGCTGGAGGGCCTATCTCTCCTTCTAGGATGCCAGAGAAGGGCTCTGAGATGGAGGGGGCTAAACCAGTTGAAGACAGTAAGGCAGCTGATGTAGTTGATGGAGATAGCAGTCCAGAATCTAAACCTAAGCCAAGCAGTTCTTTGCCTGATGGTAGTGTGGTTGGTGATGGTATCTCGAATCGCGAAGTTGAAGCGGATGTTGTTAATGACCCTTTCCATAGGTTGCAAGAAGTTGATGGCAATACAAACGATAGACTGCATGGTGTTAGTACATCTGACCGAAGGCTATCTTCCAAGTTGAACTGCGATTCTGCCAAATTAAGGAATGATGAATTACTTCAGGCTTCAGGCTCTTCAAGTAATTTGATTTCTGTAAGTGCAAGTGAGATGAAGGGCGAGAAGAATGATGAAACCAACACATCAGCTGATGTGAAACTTGAAAAACCTCAAAGCGACCTGGATCCTATGGTATCTGAATCCCGAAGTGTAGGTGGCTCATGTTCGGCGACCAACCTTGAGGGCGAGCACATGGAGGAGAATTTGGAATCTAAATTTAATAAGGAGAAAAATGGAGGACAAACACATCATTGGCAATCTATTCTCACTCCTGTTCGAGAAACTGAACAGCCTCTTCCATCCAAGAGGTCCAAATTAGCTGGTGCTGAAGCAGAAGAAGCAGAGGAGTCTACATCCACTGCTGCAGATGCTGGTTCCATGTCTGCTTCAGGAGTGCCAGATATGGATGCTAAGTTGGAATTTGATTTGAATGAAGGCTTTAATGTAGATGATGGAAAATGCAGTGAGCCAAGCAGCATTCCTGCTTCAATTACAACTGTTCAGTTAATTAGTCCGTTACCCTTTCCTGTATCTATATCTAATGTGGCAAGCAACATTCCTGCTTCAATTACAGTTACAGCTGCAGCAAAAAGACCCTTTGTACCACCTGATGATCTATTGAGGAGTAAAGGGGAACTTGGCTGGAAAGGATCAGCCGCCACAAGTGCTTTTCGACCTGCTGAACCTAGAAAAATTCTAGAAATGCCACTAGGTGTTCCAACTGCTTCACTTCCTGATGCTGCAGCCAGTAAAATTTCACGACCCCCATTGGATATTGACTTGAATGTTCCTGATGAAAGGACTCTTGAGGATATGAATCCCCAGATATTTTCTGAGGAGGTGGGTTCTAAGTCTGGCCTGGTTAATAATCGTGATCTAGCACGTGATATAGGTTCCACACATGGGCGTTGTTCTGGAGGACTAGATCTTGACTTAAACCGAGTTGATGATGCTCCTGATCCAAGCAGCTTCTCCTTGAACAACTGTCGTAGAATAGAAACTCCTCTTAGTGTTAAATCATCAACTGTTCGTCTCAATGACAAGGTGAATTTTCACAGGGACTTTGATTTGAATGGGCCTATTGCTGATGAGAGCACTACTGAACCGTCAATATTTCCTCAGCATGCTAGAAGCCATATGCCATCCCAGCCAACTGTTTCTGGCCTTTGGATGAACAATGCAGAAATAGGAAATTTTCCATCCTGGTTTCCTCCAGGAAATGCTTATTCAGCTGTTGCAATTCCATCAATTATGCCTGATAGAGCAGAACAGGCTTTTCCAGTTGCAACAAATGGACCGCCCAGGATTTTGGGACCCACAAGTGGTACCAGTCCATATAGCACCGATGTCTTTAGAGGCCAAGTATTATCATCTTCTCCTGCAGTGCCGTTTCCTTCAACTTTTCAATATCCTGTCCTGTCTTTTGGAAACAGCTTTCCTCTACCCTCGGCCACATTTTCAGGCAACGCAACAACATATGTTGATTCGTCATCTGGTGGCAGGCTTTGCTTCCCTGCGGTCGCTTCACAGTTCTTAGCTCCTCCCGGTGCAGTTTCAACGCATTATCCAAGACCTTTTGTTGTCAGTCACTCAGATGGCGGCAACAATACTAGTTCTGATAGTAGTAGAAAGTGGGGGAGACAAGGTTTAGATCTAAATGCTGGCCCTACTGTTCCAGACGTTGAAGGAAGAGAGGAATCATCGTCCTTGGTACCAAGGCAACTATCTGTTGCCAGTTCGCAAGCCACCACCGAGGAGCATATGAGGATTTACCAGCCAGCAATTGGCATGATGAAGAGAAAAGAGCCAGAGGGAGGGTGGGATGGTGCTTTGAGGATTGGCATTGAGCTGACTTCCACTGCTGGTTGTCATCTTGGTGTGCTTTTTGGAGGAGGTGGTGAGTAG 5526 44.01 MFLTRIFGRTFLAAARSETSAATAAAGSTARTGYNPLEEFFEAHRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIDEPDPRRSAEMKRMESNLVLTTILEDLEMVMNCGNVMMEKIIVEDLDVMCVLKMKELTKKKGGNNDGLMLLCWENERFLGKRIVLNCLSSDELGLGLMVLVRREGGIEVGIGENARLCMGVEGGRRISVGDCALFKPPKDSPPFIGIIRWLTTGKENKLKLGVNWLYRSSELKLGKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLPKDIKLPSGISSFVCRRVYDIRKKCLWWLTDQDYINEHREEVDQLLDKTRLEMHASVQPGGRSPKPTSGPTSTSQLKANSDGVQATFPSHTKGKKRERSDQGLESVKRERIVKADEGDSATCRLENTLKFEITKIAEKGSLVDSEAVEKLVQLMLSDSDKKIDLAGRSALAGVIAATDKVECLNQFVHLKGLPVLDEWLQEVHKGKIGSGSSPKDSDKAVEEFLLILLRALDKLPVNLPALQMCHIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEAEMNINDAKSGSNQAVAWSARTRSSEVAHGGRNQDASSEVAMKSSVSQLSTSKSASVKLAQDDSVTRSASASPGSMKPVLSPASASINSKDGSSRNPGVCGTADLSQTIARDEKSSSSSQSHNNSQSCSSEHGKSGGLGKEDARSSTAGSMSVNKISGGGSRQRKSVNGFPSTVLSGAQRDVGSGKSSLHRNTVLERSSQSGTTYEKASDGPIGEGNSPKLIVKITNRGRSPAHSVSGGSFEDPSIMNSRASSPPLSEKHDQFDHSKSDTCQPNITGDVNVESWQNSDVKDMVTGSDDGDGSPAAVHGEDRCQAVEDIKVSRANDHKNGKLHEASLSSINALIESCIKCSEASMPTSLMDNVGINLLASVAAVEMSKSDFVLPSDTQGNITAVDRTSRSSDCKVKASYPEEEARDHIQSNDAMDVPEQGVITTSFGAKIVDGRCASQSEEKPVGDLSGHSKSSGVNLQPTAVPFPDGCIKMNEAGGPISPSRMPEKGSEMEGAKPVEDSKAADVVDGDSSPESKPKPSSSLPDGSVVGDGISNREVEADVVNDPFHRLQEVDGNTNDRLHGVSTSDRRLSSKLNCDSAKLRNDELLQASGSSSNLISVSASEMKGEKNDETNTSADVKLEKPQSDLDPMVSESRSVGGSCSATNLEGEHMEENLESKFNKEKNGGQTHHWQSILTPVRETEQPLPSKRSKLAGAEAEEAEESTSTAADAGSMSASGVPDMDAKLEFDLNEGFNVDDGKCSEPSSIPASITTVQLISPLPFPVSISNVASNIPASITVTAAAKRPFVPPDDLLRSKGELGWKGSAATSAFRPAEPRKILEMPLGVPTASLPDAAASKISRPPLDIDLNVPDERTLEDMNPQIFSEEVGSKSGLVNNRDLARDIGSTHGRCSGGLDLDLNRVDDAPDPSSFSLNNCRRIETPLSVKSSTVRLNDKVNFHRDFDLNGPIADESTTEPSIFPQHARSHMPSQPTVSGLWMNNAEIGNFPSWFPPGNAYSAVAIPSIMPDRAEQAFPVATNGPPRILGPTSGTSPYSTDVFRGQVLSSSPAVPFPSTFQYPVLSFGNSFPLPSATFSGNATTYVDSSSGGRLCFPAVASQFLAPPGAVSTHYPRPFVVSHSDGGNNTSSDSSRKWGRQGLDLNAGPTVPDVEGREESSSLVPRQLSVASSQATTEEHMRIYQPAIGMMKRKEPEGGWDGALRIGIELTSTAGCHLGVLFGGGGE 1841
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 609816 620227 - Carg18143-RA Car11g00107 156060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00107 1841 MobiDBLite consensus disorder prediction 1109 1132 - -
Car11g00107 1841 MobiDBLite consensus disorder prediction 1737 1753 - -
Car11g00107 1841 MobiDBLite consensus disorder prediction 1222 1265 - -
Car11g00107 1841 MobiDBLite consensus disorder prediction 1736 1791 - -
Car11g00107 1841 MobiDBLite consensus disorder prediction 425 445 - -
Car11g00107 1841 MobiDBLite consensus disorder prediction 1250 1264 - -
Car11g00107 1841 MobiDBLite consensus disorder prediction 1058 1192 - -
Car11g00107 1841 MobiDBLite consensus disorder prediction 618 886 - -
Car11g00107 1841 Pfam BAH domain 252 357 IPR001025 GO:0003682
Car11g00107 1841 MobiDBLite consensus disorder prediction 1776 1791 - -
Car11g00107 1841 MobiDBLite consensus disorder prediction 853 868 - -
Car11g00107 1841 MobiDBLite consensus disorder prediction 1178 1192 - -
Car11g00107 1841 MobiDBLite consensus disorder prediction 396 422 - -
Car11g00107 1841 Pfam Mitochondrial 39-S ribosomal protein L47 (MRP-L47) 37 123 IPR010729 GO:0003735|GO:0005761|GO:0006412
Car11g00107 1841 MobiDBLite consensus disorder prediction 757 819 - -
Car11g00107 1841 MobiDBLite consensus disorder prediction 1225 1249 - -
Car11g00107 1841 MobiDBLite consensus disorder prediction 390 445 - -
Car11g00107 1841 MobiDBLite consensus disorder prediction 1282 1340 - -
Car11g00107 1841 Pfam TFIIS helical bundle-like domain 562 611 IPR017923 -
Car11g00107 1841 ProSiteProfiles TFIIS N-terminal domain profile. 528 614 IPR017923 -
Car11g00107 1841 MobiDBLite consensus disorder prediction 1161 1176 - -
Car11g00107 1841 ProSiteProfiles BAH domain profile. 250 365 IPR001025 GO:0003682
Car11g00107 1841 MobiDBLite consensus disorder prediction 618 745 - -
Car11g00107 1841 MobiDBLite consensus disorder prediction 1287 1301 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00107 - - - bhj:120071278 2630.13
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00133 Car11g00107 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01551 Car-Chr1:12965060 Car11g00107 Car-Chr11:609816 3.76E-10 dispersed
Car09g00085 Car-Chr9:433278 Car11g00107 Car-Chr11:609816 1.17E-09 dispersed
Car11g00107 Car-Chr11:609816 Car16g00597 Car-Chr16:3800537 0 dispersed
Car15g00181 Car-Chr15:963415 Car11g00107 Car-Chr11:609816 6.37E-06 dispersed
Car10g00133 Car-Chr10:626757 Car11g00107 Car-Chr11:609816 2.90E-55 transposed
Car10g00132 Car-Chr10:619282 Car11g00107 Car-Chr11:609816 0 wgd
Car11g00107 Car-Chr11:609816 Car14g00576 Car-Chr14:3130662 5.43E-93 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g703 . . . . . Bpe13g00257 Bma06g00204 . . . Cma10g00141 Cma11g00108 Car10g00133 Car11g00107 . . . Bhi02g00411 . . . Hepe09g0182 . . . . . . . . . . . . . . . . . . . . Bda14g00820 . . . . . . . . . . . . Cpe18g00832 . . . . . . . . . . . . . . Lsi06g01531 Csa01g00171 Chy02g02560 Cme02g01948
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4224 PF01426 BAH 4.70E-08 No_clan Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00107 Car_Chr11 FPKM 14.541667 17.128183 12.535638 11.253522 19.71777 16.94453 20.473696 3.694112 3.930076 4.633015