Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00114 ATGGGTGGCAATGGCAAGTTCCGGTGGAAATCCATCTTCTCCCATCGTCGTTCTTCTTCTAGTTTTAGGGTCGAATCCAAGGAGCCTCCTAACGAGTTCATTTGCCCAGTTTCCGGATCCTTAATGGCCGACCCGGTTGTTGTCTCTTCCGGCCAGACCTTTGAGCGTGTTTCTACGCAGGTTTGCAGGAGTTTGGGGTTCTCCCCTGTGTTAGAGGATGGCTCGACCCCAGATTTCTCCACTGTGATTCCGAATTTGGCTATGAAGAAGACGATTCTCCATTGGTGTGAGGAGTCCGGTGTCAGGAATTCTCAGGCGCCTGATTACGACTCCGTGGAGAAGATTGTTAGAGCATTGATGGAGGAGAAGGACAAGGAGAAGCCTCAGGTTGGAATTAGGGATTCGTCGGATAGGGATTTGCTAGCGGGGGTATCGGATTTGCCGCCGGTGAATTTTTCGCACGCCGTGACGGAGTTAGGCCACCGTCCAGAACGTTACTACACGAGCTCCTCGGAGGAATCGGTCATCGTCGGAGGGAGTCCGGGGACTCCGCTGCCGTTTACGACTCGACCTGGGTGTTATTCCTCTTCGTCTTCTTCCTGTGAAGTTGTGGAAAACGAAGCGCTCATCCAAACCCTAGGCCCTAATTCATCGATATCCCAAGACGAGAAGGAATTGCTATCGAAGCTCACGAGTCCCGATGTGTTCAAGCAAGAAGAAGGCGTTATTTCGCTTAGAAAAATCACGAAAGAAAATGAGAAAATTAGGGTTTCGCTTTGTACGCCTCGGATTCTCTTATCTCTCCGCCCTTTGATTACATCGAGATACTCCGCCGTACAAATCAACGCCCTCGCCTCTCTGGTAAATCTCTCCCTCGAAAAGTTAAACAAGCAAAAGATCGCCCGGTCAGGTCTGGTTCCGAACTTAATCGACGCGCTGAAAGGAGGACATGCGGAAGCGCAAGAACACGCCGCCGGAGCACTCTTCAGCCTAGCCTTGGAGGACGAAAATCGGATGACAATCGGAGTTCTAGGCGCACTGCCGCCACTCCTTTACGCACTCCGATCGAATAGCGAGATAACTCGAAAGGATTCCGCTCTGTGTCTGTACAACCTAACAATGATACAGAGCAACCGAGTGAAGCTCATCAAACTCGGCGCCGTAACGACTCTACTCTCCATGGTGAAATCAGGTAGCTCAATGAATTGGCTGCTGCTGATCCTCTGCAACATCGCCGTGTGCCAGGAGGGAAGATCGGCAATGCTAGACGCCAACGCCGTCGGGCTCTTGGTCGGAATGCTGAGGGAGAAAGAATTATACTCGAAATCAACTCGCGAGAATTGCGTTGCGGCATTGTACGCACTCAGCTATGGAAGTATGAGGTTCAAAGGACTGGCGAAGGAAGCCGGAGCAATGGAGGTTTTGAGGGAGATTGCTGAAAGAGGAAGTGATAGAGCGAGAGAGAAGGCGAAGAAGATATTGGAGAGGATGAAGATGAGAGGGACATTCAATGAAGACGATGACGACGAGGAAGAAGAAGAAGAAGAAGAAGACGCCAATGGCGGTGAGTCGAGTTTCGAAAGAGGCGGACTCAGGTTGAGTCGGTACCGAAACGGCGGTGGAAGAAGTCCCAGATCGGCAAATACGACGCCGTTTTGA 1659 51.24 MGGNGKFRWKSIFSHRRSSSSFRVESKEPPNEFICPVSGSLMADPVVVSSGQTFERVSTQVCRSLGFSPVLEDGSTPDFSTVIPNLAMKKTILHWCEESGVRNSQAPDYDSVEKIVRALMEEKDKEKPQVGIRDSSDRDLLAGVSDLPPVNFSHAVTELGHRPERYYTSSSEESVIVGGSPGTPLPFTTRPGCYSSSSSSCEVVENEALIQTLGPNSSISQDEKELLSKLTSPDVFKQEEGVISLRKITKENEKIRVSLCTPRILLSLRPLITSRYSAVQINALASLVNLSLEKLNKQKIARSGLVPNLIDALKGGHAEAQEHAAGALFSLALEDENRMTIGVLGALPPLLYALRSNSEITRKDSALCLYNLTMIQSNRVKLIKLGAVTTLLSMVKSGSSMNWLLLILCNIAVCQEGRSAMLDANAVGLLVGMLREKELYSKSTRENCVAALYALSYGSMRFKGLAKEAGAMEVLREIAERGSDRAREKAKKILERMKMRGTFNEDDDDEEEEEEEEDANGGESSFERGGLRLSRYRNGGGRSPRSANTTPF 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 657657 659315 + Carg18151-RA Car11g00114 156067
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00114 552 Pfam U-box domain 30 98 IPR003613 GO:0004842|GO:0016567
Car11g00114 552 ProSiteProfiles U-box domain profile. 28 102 IPR003613 GO:0004842|GO:0016567
Car11g00114 552 MobiDBLite consensus disorder prediction 497 552 - -
Car11g00114 552 MobiDBLite consensus disorder prediction 505 521 - -
Car11g00114 552 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 304 341 IPR000225 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00114 Car-Chr11:657657 Car15g00301 Car-Chr15:1625422 8.91E-172 dispersed
Car10g00140 Car-Chr10:669534 Car11g00114 Car-Chr11:657657 0 wgd
Car11g00114 Car-Chr11:657657 Car13g00744 Car-Chr13:8486765 0 wgd
Car11g00114 Car-Chr11:657657 Car18g00141 Car-Chr18:771106 2.60E-175 wgd
Car11g00114 Car-Chr11:657657 Car04g02629 Car-Chr4:20494167 3.56E-164 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00114 - - csv:101213423 796.193