Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00117 ATGATATATGCCGAAGACGAAGACTCCAGAGTCAAAAGAGCGAGTCTTCGTCAAGCTGCAGCAGCAGAGGAGGATAGCAGGAGGAGGCGAGACCATCATCGGAGGCTGAGGAAAATGGTTCACGCCAGGCTTGAAGACGCCACCGGTTTTAAGGCGGAGCTGATCGGAAGCGCCTGGACGGCCGCCGTTAAAGCTCACAAGCATGCAGAGAAGCCATTTCTCCTTGAAACTAGCAGCAGAGACTTTTCCATCATCAGTTTCCCCGGATCTTGGTCGGCGGAAGGCTGGTTCTCCGGTTCCGATTCATGTTTTGGAGAAACGAAGATCAACACCCAACTGTTTCCGTCCATCAGGAGCATCGGCGTTAACGATTATGCGCTCGTCAACTCCGCATTTCTCCACAGATTTGAAGCTATCTTAGGGAAGCTGATCAAGGAGGTCATGCGAGTGAGTAAGGCAGTGGTGTTTACTGGCCACTCTGCAGGCGGTCCGATAGCCATTCTTGCAACCATTTGGCTATTGGAAGAGCAAAGAAAGAACTCAAACTCAAACACAGACACCAACTCCTCCACTCCTCCAAAATGCATCACATTTGGATCTCCCCTTGTTGGTAATTTCATTCTCTCCCATGCTCTCAAGAGGGAGAAATGGTCTATCCATTTCATACACTTCATCATGAGATACGACGTTGTCCCACGAATCCATCTCGCTCCCTTACCTTCCTTGCAACCAGTACAACTGCAAACCATCCTCAACTCCTTGAACTCGAGATCTCTCGAATCGTCGTCCAATGGGGATGTAACTACTGCATTCTTCATGACAGTGATGAGCAATGCATCGAGTGTGGCAAACAATGCAGCCTGCCATCTTATGGAAAGCACTAGTCTTTTGCTAGAAAACTTGAGAAGCTTTATCAAATTGAGTCCTTATAGCCCTTTTGGGACATACATTTTCTGTACCGAGAGTGATGAGGTGGTGGTGCTGACCAACCCGCATGCTGTTTTACAAATATTATTCTACTCCTGTCAGTTTAACTCTGAGAGCGAACGGGGTCAGGTAGCTCATCAGAGTTTAAAGGACCATTGGGAGTATGAATCTAAAATGCACCAAAACTTGGAGCTCCTGCATGCTATTCGTCTGGATGAATTGCACAAGCTTCCTCTGTCTTTGACTGGAAGGAGCACGCCAATCACACAAGCCTTGAATCGACTCGGCCTAAGTACGAGGGCTTTATTGAATCTTCGTGCAGCTGGCACATACGAAGAGAAAAAGACGAAAAACCAAGAAAGGATGGAAGCAAAGAAGCAATATATCGAGCAAGGATTGAATTCGCTAGAAGAAAACTACAGAGCTGTATGTAGGGTTGATGGTATGGGATATTATGATGCATTCAAACGCCAAAAGAATGACACAGACTTCAAAGCCAATATCAAAAGGCTTGAGCTAGCAGGTATATGGGATGAGATCCTAGGAATGCTGAAAATGTATGAGCTCCCTGATGAATTTGAAGGCAATGACGAATGGATACAACTTGGAACCAAGTATCGCCGTCTCGTTGAGCCTTTAGATATTGCTAATTACTACAGGCACTCTAAGAATGATGACACTGGTCCTTATCTGAAAATGGGAAGGCCAAACCGTTACAGATTTACACAAAGATGGCTCGAACATAATCGAAAGATGACAGAATACAGTGAAGAATCAATTCTTTGGGCAATGGTGGAGGAGCTTCAAATCCAAACCAGAACCAGAATGTATGTAGAGCATTCAAGAGAAATCATAGAGTTGGAGAAGAAGATGAAGAGATGGGTCAATGAGATTGGAGAGGATATGTTGTTAAAGAAATCTACGTTCATGGAGTGGTGGAAGACACTTCCTGAACAACACAGATCACAGTCTTGTCTTAAGGATGATATTCAGAGGATGGAGAAAAAAGACGATGCTATGAACTGGGAGTAG 1959 45.23 MIYAEDEDSRVKRASLRQAAAAEEDSRRRRDHHRRLRKMVHARLEDATGFKAELIGSAWTAAVKAHKHAEKPFLLETSSRDFSIISFPGSWSAEGWFSGSDSCFGETKINTQLFPSIRSIGVNDYALVNSAFLHRFEAILGKLIKEVMRVSKAVVFTGHSAGGPIAILATIWLLEEQRKNSNSNTDTNSSTPPKCITFGSPLVGNFILSHALKREKWSIHFIHFIMRYDVVPRIHLAPLPSLQPVQLQTILNSLNSRSLESSSNGDVTTAFFMTVMSNASSVANNAACHLMESTSLLLENLRSFIKLSPYSPFGTYIFCTESDEVVVLTNPHAVLQILFYSCQFNSESERGQVAHQSLKDHWEYESKMHQNLELLHAIRLDELHKLPLSLTGRSTPITQALNRLGLSTRALLNLRAAGTYEEKKTKNQERMEAKKQYIEQGLNSLEENYRAVCRVDGMGYYDAFKRQKNDTDFKANIKRLELAGIWDEILGMLKMYELPDEFEGNDEWIQLGTKYRRLVEPLDIANYYRHSKNDDTGPYLKMGRPNRYRFTQRWLEHNRKMTEYSEESILWAMVEELQIQTRTRMYVEHSREIIELEKKMKRWVNEIGEDMLLKKSTFMEWWKTLPEQHRSQSCLKDDIQRMEKKDDAMNWE 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 669125 671790 + Carg18154-RA Car11g00117 156070

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00117 652 Coils Coil 428 448 - -
Car11g00117 652 Coils Coil 586 606 - -
Car11g00117 652 MobiDBLite consensus disorder prediction 14 30 - -
Car11g00117 652 Pfam Enhanced disease susceptibility 1 protein EP domain 447 636 IPR041266 -
Car11g00117 652 Pfam Lipase (class 3) 89 235 IPR002921 GO:0006629
Car11g00117 652 MobiDBLite consensus disorder prediction 14 33 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00117 K18875 EDS1; enhanced disease susceptibility 1 protein - csv:101214385 882.093
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00146 Car11g00117 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car07g01224 Car-Chr7:7518508 Car11g00117 Car-Chr11:669125 1.49E-22 transposed
Car14g00573 Car-Chr14:3113748 Car11g00117 Car-Chr11:669125 5.02E-28 transposed
Car17g01207 Car-Chr17:9196647 Car11g00117 Car-Chr11:669125 3.99E-09 transposed
Car10g00146 Car-Chr10:691050 Car11g00117 Car-Chr11:669125 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g677 Blo04g00750 . Bda06g00573 . . . . . . . Cma10g00155 . Car10g00146 Car11g00117 Sed08g1374 . . Bhi02g00383 Tan09g2193 Cmetu04g3167 . Hepe09g0163 . . . . . . . . . . . . . . . . . . Blo15g00283 . Bda14g00829 Bpe07g00815 Bpe15g00622 Bma03g00803 . . Cmo10g00166 Cmo11g00124 . . . . . Cpe18g00822 . . . . . . . . . . . . . . . Csa01g00187 Chy02g02546 Cme02g01930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004701 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 2 6 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00117 Car_Chr11 FPKM 4.346088 4.42567 6.833289 7.339665 6.642027 6.811494 6.740698 11.123568 10.214096 11.063091