Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00119 ATGCCTCTCTCCGCCTCCGTGACACAGAGCCTGAAGCTTCGGATTCTCTCGTGCCTCACCAAGCTTTCCGACCGAGATACCTATTCTCTTGCTGCATCCGAGCTTGAATCTATTGCTCGGAGTCTTGACGTTAGTTCCTTGCCGATTTTCCTTTCCTGTATATACGCAATTGATGCCTCCGATAAATCGCTGGTGAGGAAGCAATGCGTTCGTCTCTTTGCTGTTCTCTCAGAGACTCATGGAAATTATCTTTCTCCTTACCTTGCGAAGATTCTTTCCAATATTACTCGCCGGTTCCGTGATCCTGATTCGTCAGTTCGATCCGCGTGCGTTAGCTCCGTAGCGGCATTAGCTTCTAATGTCACTAAACCGCCGTTTTCGACGTTTTTGAAGCCTTTAACTGATTCGCTTTTCACGGAGCAGGATTCCAATTCGCAGATCGGGGCGGCTTTGTCTTTGGCTTCGGCAATTGATGCAGCACCGGATCCGGATCTGCTTAAGCTCGGCAAACTCTTGCCGAGATTTGAGAAGCTTTTGAAATGCGAGAGTTTCAAGGCAAAGGCGGCACTCTTGACAATGATCGGGAGTATTATTGGATTGGATGGAGCTTTTGGAAATGGAGCTCTGAAAAATTTGGTCCCGTGCTTGGTTACATTCCTTAGCAGTGAGGATTGGGCGGCGAGAAAATCAGCGGCGGAGGCGCTGGGTAAACTAGCAGTCATGGAGAGGGATGCTCTGGCGGAATTCAAGGCTGGTTGCTTGAAAACGTTCGAGAGTCGGCGATTCGACAAGGTCAAGGCAGTACGGGAGGCGATGAGTCAGATGCTGGAGGCATGGAAGCAGATTCCTGATCTCTCGGACGAGGCGTCTGCACCTTATTCCCAATCCTCCTCGAAAGAAATCGCTAGTGATGGACGTTATCTACCTGGATCCAAGAATATTTCTTCTGCTTGTCTTGATGCTCCTCTTCCGAGGAAAAATAGTAGCCTAGTTGGCAGGTCTACACCACCCGATGCCTCGTCTGCGACGACGGCGAGAAGGAGAAGCGCTTTGAACGGCGGTGACAAGAAATCAAGTTTGTCAATGTTCCAAAAGGTTGAGCGTAAGAAGCCTCTGGACTGGAAGGTGGAAGTCTCTGTTAGGAAGTCTCCCTCAGGAGATCTGAAGGAAAGAGATGAATACATACCAGATAGAAGGTTTAGTGAAAACACCAAGATTTCGAAACCAGAAACAAAACGGGCACTCTTCAATAAGATTTCTGACGATAAGATAATTAAATTCGGTGGGTTCAGGTCTGGATCTCGCGTAGTTCCGTGTCCCGAGGAGGGCCCTGAATCGACTGTTGTAGCAAGTAATACAACCGACGATCTGCACAGGAACCACAAAGACTCTGAAGAATTGCATTTGATCCGTAATCAGCTTAATCAAATAGAAAAGCAGCAATCCAGTCTTCTAGACATACTCCAGAACTTCATTGGGAGTTCACAGAATGGAATGAGATCCCTGGAGACGCGTGTGCATGGTCTGGAATTGGCATTAGACGAGATCTCATATGATCTGGCTGCATCATCAACTGGAAGGATGTCTTATGCCAACACCCCCAGAATCACATGTTGCATGCTGCCTGGAGCTGATTTTTTTAGCTCATGGTTCTGGAAGAGATCAAATGGCAGAGGTTCAACACCAAAGGTTTCAATTCCCAGCGGTGTAACTCCACTGGCTCCATTGCGTAGCAGAGGTGATCGCCATGGAACTAATGGGGATGCTGGATCTATAAATTTGGAGAATCATAGCTTTCAGGTCCAGCCAAGGGGTGGCTTCATAGTGAATCCACTGGCTGTGAGGCAAGGTGAATCCAGGGTTGTCTCCGATGCCAGCACTTCCTTGAACGATTTGACTAGGAGGCACTAA 1911 48.19 MPLSASVTQSLKLRILSCLTKLSDRDTYSLAASELESIARSLDVSSLPIFLSCIYAIDASDKSLVRKQCVRLFAVLSETHGNYLSPYLAKILSNITRRFRDPDSSVRSACVSSVAALASNVTKPPFSTFLKPLTDSLFTEQDSNSQIGAALSLASAIDAAPDPDLLKLGKLLPRFEKLLKCESFKAKAALLTMIGSIIGLDGAFGNGALKNLVPCLVTFLSSEDWAARKSAAEALGKLAVMERDALAEFKAGCLKTFESRRFDKVKAVREAMSQMLEAWKQIPDLSDEASAPYSQSSSKEIASDGRYLPGSKNISSACLDAPLPRKNSSLVGRSTPPDASSATTARRRSALNGGDKKSSLSMFQKVERKKPLDWKVEVSVRKSPSGDLKERDEYIPDRRFSENTKISKPETKRALFNKISDDKIIKFGGFRSGSRVVPCPEEGPESTVVASNTTDDLHRNHKDSEELHLIRNQLNQIEKQQSSLLDILQNFIGSSQNGMRSLETRVHGLELALDEISYDLAASSTGRMSYANTPRITCCMLPGADFFSSWFWKRSNGRGSTPKVSIPSGVTPLAPLRSRGDRHGTNGDAGSINLENHSFQVQPRGGFIVNPLAVRQGESRVVSDASTSLNDLTRRH 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 675397 678788 + Carg18156-RA Car11g00119 156072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00119 636 Coils Coil 629 636 - -
Car11g00119 636 Coils Coil 460 480 - -
Car11g00119 636 MobiDBLite consensus disorder prediction 325 360 - -
Car11g00119 636 MobiDBLite consensus disorder prediction 328 359 - -
Car11g00119 636 MobiDBLite consensus disorder prediction 558 591 - -
Car11g00119 636 Pfam HEAT repeat 212 239 IPR000357 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00119 - - - cmos:111440538 1180.24
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car05g00838 Car-Chr5:8264247 Car11g00119 Car-Chr11:675397 8.20E-174 dispersed
Car11g00119 Car-Chr11:675397 Car12g00678 Car-Chr12:4673783 8.61E-174 dispersed
Car10g00149 Car-Chr10:702716 Car11g00119 Car-Chr11:675397 4.31E-68 transposed
Car10g00148 Car-Chr10:700533 Car11g00119 Car-Chr11:675397 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g669 . . . . . . . . . . Cma10g00157 . . Car11g00119 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo10g00169 Cmo11g00126 . . . . . . . . . . . . . . . . . . . . . Csa01g00189 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005976 1 1 1 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00119 Car_Chr11 FPKM 2.125541 2.711009 1.712513 1.993711 4.197021 4.012485 4.634995 1.834989 2.361593 1.90842