Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00122 ATGCGAAGCATCACCGCCGCCGTCAAGGAATCCGCCGCCACCGAGATTGGTGGCGGAGGTCCTGGTGAGATCATGCTGTTTGGTGTCAGAGTGGTGGTGGATTCGATGAGGAAGAGTGTGAGTTTGAATAATCTGTCGCAGTACGAGCAACCTCATGAGGCCGCCGATGTAATCGCCAACGATAACATGAACGACCCCGTTTCCGTCAATCACAAAGATGTTGTTGCTGCTGGTTATGCCTCTGCGGATGATGCTGTTCCCAACGCCTGTGGGAACCGCGAACGTGAGCGCAAGCGAGGTGTGCCTTGGACTGAGGAGGAGCACAAGCTGTTTTTAATTGGACTGCAACAAGTGGGGAAGGGGGATTGGAGAGGAATTTCTAGGAACTTTGTTAAGACTCGCACCCCAACTCAGGTCGCTAGCCACGCGCAGAAATACTATCTTCGCCGGAGCAATCTAAATCGCCGTCGCCGTAGATCTAGTCTTTTTGACATCACGACGGACACGGTCACGGCTGTTCCTATGGTTGAAAATTCGGTGCAGCTTCAAGAAACTGCTTCTCAATCCCATTCCTTGACTCCATCAAACCAACTCGAAATTTCCAAGAACAATGTAATTCCGGCGTTGCAAACTTTACCATTTTCATTTGGGCCAACACCATTTGCCACTCCAACCAAGAATCCGATGGAAAAGGGTGGTGGTCCTGGAGAAGTAAGCACAGAAAAAGATGGACCACTGAAGCTTGGCCTCACGAATTCCATCTATTCCTCTGATCAAACTCCAAACTTGAACTCAAACTCAGCAATGGAGTCATCAGCTCTATCTCTTCGCCTTGCATTAACATCTGAGCAGAGGGAGGCTTCAACAAGACACTCAACTTTCCAGTCCATGCCTAGTTTCAATAATGGTGAGGGCATCATAAGTGCTGCTTGA 933 49.41 MRSITAAVKESAATEIGGGGPGEIMLFGVRVVVDSMRKSVSLNNLSQYEQPHEAADVIANDNMNDPVSVNHKDVVAAGYASADDAVPNACGNRERERKRGVPWTEEEHKLFLIGLQQVGKGDWRGISRNFVKTRTPTQVASHAQKYYLRRSNLNRRRRRSSLFDITTDTVTAVPMVENSVQLQETASQSHSLTPSNQLEISKNNVIPALQTLPFSFGPTPFATPTKNPMEKGGGPGEVSTEKDGPLKLGLTNSIYSSDQTPNLNSNSAMESSALSLRLALTSEQREASTRHSTFQSMPSFNNGEGIISAA 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 686196 688241 + Carg18159-RA Car11g00122 156075

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00122 310 Pfam Myb-like DNA-binding domain 102 146 IPR001005 -
Car11g00122 310 ProSiteProfiles SANT domain profile. 98 151 IPR017884 -
Car11g00122 310 MobiDBLite consensus disorder prediction 216 310 - -
Car11g00122 310 MobiDBLite consensus disorder prediction 250 310 - -
Car11g00122 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 151 IPR017930 -
Car11g00122 310 ProSiteProfiles Myb-like domain profile. 95 147 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00122 - - - csv:101214626 445.277
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00209 Car11g00122 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00122 Car-Chr11:686196 Car16g01061 Car-Chr16:9121252 4.64E-50 dispersed
Car10g00150 Car-Chr10:714485 Car11g00122 Car-Chr11:686196 4.99E-158 wgd
Car11g00122 Car-Chr11:686196 Car13g00754 Car-Chr13:8546639 1.20E-74 wgd
Car11g00122 Car-Chr11:686196 Car18g00134 Car-Chr18:717104 1.01E-64 wgd
Car11g00122 Car-Chr11:686196 Car04g01650 Car-Chr4:9512870 1.14E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g624 . . . . . . . . . . Cma10g00225 . Car10g00209 Car11g00122 . . Cpe04g01470 Bhi02g00262 Tan09g2060 . . . . . Cla06g01553 Cam06g1716 Cec06g1777 Cco06g1776 Clacu06g1684 Cmu06g1629 Cre06g2440 . . Cone13ag0044 Cone19ag0049 . . . . . . . . . . . . . Cmo10g00236 Cmo11g00201 . . . . . Cpe18g00768 . . . . . . . . . . . . . . Lsi06g01427 Csa01g00277 Chy02g02455 Cme02g01843
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005075 1 1 2 0 2 1 3 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4226 PF00249 Myb_DNA-binding 1.90E-10 CL0123 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00122 Car_Chr11 FPKM 12.760472 13.598395 24.238253 24.067175 13.146343 11.499756 11.916129 25.109621 26.082264 23.563404