Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00123 ATGGTGTATGCATCTACTCATAACAAGAACATGCACGCCCTTCTAACAGCCAAACTCACCAAATTGACTCTCCCTTCCTCTTCTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTTCATCCACGGCCGCCCTTCTTGACTTCGACTTCTCTGACGTATTCGGCCCCACAAATTCCTCTTTACCATCTTTCCCCGGGGACCCACAGCACAATGAACAACAACCAGCGGTCATTCATAATAGATCTCACTCATTTGTGGGTCCGTCTCCACGGTTAACTCCCCCGTCTTCCCTTTCTTTTTTCCGGGAAGTTAAATCACAGATCGAGGAGGAAGAAGATGACCTAGAAATCTCGACTGGCGATGGAGTTCAAAAGGAGAAGGGGGCGGATGAGAGCGAGAATGACGGTGGAGAAAATTCAGAGGGGAAGGTTGGAGTTGGGGATTTCGATATTCTTCGAGTTGTGGGAAAAGGGGCGTTTGGGAAGGTCTTTCTAGTGAGGAAGAAAGGGGATTCGAAAGGAAACGGTCCCAATAATGATGGGATTTACGCCATGAAAGTGATGAGAAAGGATACCATTATAAAGAAGAATCATGTGGATTATATGAAGGCTGAGAGAGATATTCTCACAAAAGTTTCGCACCCTTTCATTGTTCAACTCCGCTACTCTTTCCAGTCCAAATCAAAACTCTATTTGATTCTTGATTTCATAAATGGGGGGCATCTGTTCTTCCATCTGTACCGGCAGGGAATCTTTAGTGAGGATCAGGCAAGGGTCTATGCTGCTGAGATCGTGTCAGCTGTTTCGCATCTTCATGACTGCGGCATTGTGCACCGGGATCTCAAGCCTGAGAACATTCTTATGGATGCTGATGGCCATGTTGTCCTTACGGATTTTGGACTGGCAAAGGAAATTGATGAATCGAGTCGGTCCAATTCGTTGTGTGGAACAACAGAATACATGGCTCCGGAAATCTTGCTTTCTAAAGGTCACAACAAGGATGCTGATTGGTGGAGCGTCGGAGTTCTTTTGTATGAGATGCTTAGTGGCAAGCCACCATTCACACACGCTAATAGAAAGAAGCTTCAAGAGAGAATAATCAAAGAGAAAGTGAAACTTCCATCATACCTGAGCACTGAAGCTCACTCTTTGCTCAGAGGGCTATTACAAAAGGATCCTTCTAAAAGATTGGGAAGTGGACCCAACAGAGGGGCGGACATAAAAAATCACAAATGGTTTCGACCTGTGAACTGGAAGAAATTGGAATGTAGGGAGCTGCAACCAAAATTCAAGCCGGATGTCAAGGGAAATGACTGCACAGCAAATTTTGATAATTGTTGGACGACTATGCCCCCCGACGACTCGCCAGCTCCAACGCCAACCGACGGAGGACACTTCCACGGATACTCGTATGTTGCTCCAGACCCTTGGCTTTCATCATCTGGATAG 1461 46.54 MVYASTHNKNMHALLTAKLTKLTLPSSSSSSPPPPPPPPPPPSSSTAALLDFDFSDVFGPTNSSLPSFPGDPQHNEQQPAVIHNRSHSFVGPSPRLTPPSSLSFFREVKSQIEEEEDDLEISTGDGVQKEKGADESENDGGENSEGKVGVGDFDILRVVGKGAFGKVFLVRKKGDSKGNGPNNDGIYAMKVMRKDTIIKKNHVDYMKAERDILTKVSHPFIVQLRYSFQSKSKLYLILDFINGGHLFFHLYRQGIFSEDQARVYAAEIVSAVSHLHDCGIVHRDLKPENILMDADGHVVLTDFGLAKEIDESSRSNSLCGTTEYMAPEILLSKGHNKDADWWSVGVLLYEMLSGKPPFTHANRKKLQERIIKEKVKLPSYLSTEAHSLLRGLLQKDPSKRLGSGPNRGADIKNHKWFRPVNWKKLECRELQPKFKPDVKGNDCTANFDNCWTTMPPDDSPAPTPTDGGHFHGYSYVAPDPWLSSSG 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 688792 691655 - Carg18160-RA Car11g00123 156076
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00123 486 Pfam Protein kinase domain 154 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car11g00123 486 MobiDBLite consensus disorder prediction 57 80 - -
Car11g00123 486 Pfam Protein kinase C terminal domain 438 475 IPR017892 GO:0004674|GO:0005524|GO:0006468
Car11g00123 486 ProSiteProfiles AGC-kinase C-terminal domain profile. 418 485 IPR000961 GO:0004674|GO:0005524|GO:0006468
Car11g00123 486 MobiDBLite consensus disorder prediction 112 147 - -
Car11g00123 486 MobiDBLite consensus disorder prediction 122 142 - -
Car11g00123 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 280 292 IPR008271 GO:0004672|GO:0006468
Car11g00123 486 ProSiteProfiles Protein kinase domain profile. 153 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Car11g00123 486 MobiDBLite consensus disorder prediction 16 80 - -
Car11g00123 486 ProSitePatterns Protein kinases ATP-binding region signature. 159 190 IPR017441 GO:0005524
Car11g00123 486 MobiDBLite consensus disorder prediction 28 45 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car04g01478 Car-Chr4:8586765 Car11g00123 Car-Chr11:688792 2.52E-63 dispersed
Car11g00123 Car-Chr11:688792 Car15g01249 Car-Chr15:9748482 9.69E-70 dispersed
Car18g00847 Car-Chr18:9459685 Car11g00123 Car-Chr11:688792 5.12E-41 dispersed
Car10g00152 Car-Chr10:717498 Car11g00123 Car-Chr11:688792 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
89158 PF00069 Pkinase 2.30E-72 CL0016 Car PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00123 K04688 - csv:101214867 776.548