Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00132 ATGGGGCCTAAGAAGAAAATCATTGATCCGCGTTCTAAACAATCTCCTGCTGCTCGTGGAGTTGTTGTGGATGTTCCAAGCTCAGCGAACGCAGCCGACCAGAATTCAATACCTGAAAAGGCTAGTAACCACAACCAAAGTAGGATCGAGCCGGTGCTTCTCAATGGACCGGATGGGTTGTCTTATTCCACAATTAAACTCGAATGCGAGCGGGCTCTTACCGCGCTTCGGCGTGGGAACCACACTAAGGCACTGAGGCTTATGAAGGAGCTGAGCTCCAGAAATGAGAACTCTGTTCACTCTGCATTGATTCATCGGGTTCAGGGTACTATTTGTGTAAAGGTAGCGTCGATTATTGATGACCTGAATACAAAGCAGCGGCATTTGAAGAATGCGATTGAGTCTGCTCGTAAAGCAGTCCAGCTCTCACCTAACTCTATCGAGTTTTCCCATTTCTATGCAAATTTGCTGTACGAGGTTGCAAATGATGCGAAGGAGTATGAGGAGGTGGTGCAGGAGTGTGAGCGGGCCCTTGGCATTGAAAATCCAATCGATCCAGCCAAGGAGAGCTTGCAGGATGAAAAGAGTCAGAAGATACCTACTGCCGAAGCACGGATTACACATGTTCAAACTGAATTGAGGCAGTTAATTCAAAAGTCAAATATATATTCGATATCATCTTGGATGAAGAACTTGGGTAACGGGGAGGAGAAGTTTAGGTTGATTCCGATAAGAAGAGTGACAGAGGACCCAATGGAGGTGAGGTTGGTTCAGGCTAGAAGGACAAATGAAATTAAGAAGGCAACCAAAACACCTGAGGAGAGAAGAAAGGAGATTGAAGTCCGTGTTGCTGCTGCAAGGCTTTTGCAACAGAAGTGTGAGACACCTCAAATTCAAAACGAAGAAGGTAAAGTTGATCGGTCCCTAGATTCATCTTTAGGATCTGGTACAAGAGCTGGCGAGCGACGGAAACATGGCAATTTACGGAAACAGGGATCTTCAGCTGAAAGGAGGGATTTGGTTCATTCTTTTTGGAATTCCATGAGTATAGAAGCAAAGAAAGATTTGCTTAAGATCAAGATAAGTAATCTTAAGGCGCATTTTAGTTCTTCAAAGGATGCTTCGGCGAATGAAGTTATTTCAGAAGCTTTGTCCTTTTATAATGCCAATAAAACATGGAAATTTTGGGTTTGCTGCAGATGTGATGAGAAATTTGTGGATTCGGATTCCCATATGCACCATGTGGTTCAAGAGCACATGGGTAACCTTTTACCAAAAATGCAATCAATTTTGCCCCAGAATGTTGATGATGAATGGACCAAAATGATTCTTAATTGCTCCTGGAAAGCATTGGATGTATCAGCTGCAGCTAAAATGCTCACCGCTGAAACAAAATGCAAAGATTCTGAGTTGGTTGTAGATATCTTCCCACAGCATCATTCAGAATGTGATAACTATTTCAAAGATGCATGGGGTTCTTCTCCAGAGAAGCATAAATATGGGGATAGTTTAAATGAATGCCGTCTTTCTGAAAAAATTACCAACAACGGATCTAAGACCTATCATGAAAACCAGGGTTCTGTGGCATCATATTCCTCATCTGACAGCTTTCCTGTATCTGATGATCCTGAGCGTACAAAGCTTCTTGAGAAAATTCATGCAGTATTTGAGTTGCTTATAAGACATAAATATCTTGCTGCTAGCCATTTAAACAAGGTTATACAATTTGCAATGGATGAGCTACAGGGTCTTGCTTCTGGATCTCATCTTCTAAACCAGGGTCTGGACCAAACACCACTATGTATTTGCTTTCTAGGTGCTTCTCAGCTTAGGAAAATCCTCAAGTTTTTGCAAGAATTATCTCAGTCTTGTGGTATTGGTAGATACTCTGATAAAAGTACTGGTCAAATTGAAGATTCAATGAGTGATAAACAAGCGGTTGAAGTCAGAGAGAAAGTTGTTCTCAGTGAAGATGCGTCACTTCTCCTCCTGAATGAGTGTTTGCTGTCATCTGATATCACTCATGCTGATGTTCCGGTTGCAGCTGCAGATCATATGCTTGCTGCAACTGCCAAGGATGTTACTTCAAATGGGGTTCTTTCTGGTGTTGACCCCTTTCTTTCCTGGATATATGCAGGTCCCTCCAGTGGGGAACAGTTGGTCTCATGGGAAAAAACAAAGGAAGAAAAGATACAGCGACGAATGGAAATTTTTCAAATGCTTGAGAAGGAATTTTACCATCTGCAGAGTCTTTGTGAGAGAAAATGTGAGCATTTGAACTACGAGGAAGCGTTGCAGTCAGTGGAGGATCTCTGCCTTGAAGAGGGCAAGAAGAGGGAAGCTTTGAATGAATTTATCCCCAAGAGTTATGAGTCAGTCCTGAGGAAGCGAAGGGAGGAGCTTATTGAGGCTGAAAATGGTGTGCTGTTTATCAGCAGTAGGTTTGAGTTAGATGCTGTAACTAATGTTTTGAAAGAAGCAGAAACTCTGAATGTTAATCAATTTGGATACCAGGAAACTTTTGCCAGCGTGTCTCCACAGTTAGGAGATCTGGAATCTGGTCAAGATGAAGAACGGAGAGCTAAGGATTATTTGCATGAAGTTGATACTTGTATAGAAGTTGCAATACAGAGACAGAAGGAACAGTTATCTATTGAGATTAGCAAAATTGATGCCCGCATCATGCGAAATGTTACTGGAATGCAACAGTTGGAACTTAAGCTCGAACCTGTTTCTGCACATGATTATCAATCAATATTGTTGCCTCTTGTAAACTCATACTTGAGGGCACATTTAGAAGATTTGGCTGAAAAAGATGCTACAAAGAAGTCTGATGCTGCAAGCGAAGCATTTTTAGCTGAATTGGCACTGGATTCGAAGAAGGGTATCAGAGGAGGAACTGATAATTCAAGACATGCACATGAAAAACCAAAGGAAAAGAAAAAGAGCAAGGAGTTTAGGAAAGTCAAGGACTCTAAGGTGGTCAGTGGTCCTGAGCAGGATGTGCATCGTGGTCAGGCTGTCGATGGAGATCCCTTTCCAGTTTCATCTGATGGTGATGCTGCAGAGGTGGATATTGCTGTTTTTGAGAATGTTGATGCGTTAAGACTACAGGAGGAAGAGCTCAGACGCAAAATTGAGCTGGAAGCTGATGAAAGAAAGCTAGAAGAGACTTTGGAGTATCAAAGACGAATTGAGAATGAGGCTAAACAAAAGCATTTGGCTGAACTGCAAAAGAAATCTGCCCAGACAACACCTAATAATCTCGCTGGACTTGTCCCCAATGTTGAAGGTGCTGATAAACATTTCAAGCCTTCTGTGGTGGATAAATTGGCAGAAAATGATTTGGTTTCCGACTTGTCTAGGAATGGTCCTGCCATGCGAAATGCTTTGTCAGGTGTCTCCAATGTAGGAGTTCTAGAGAATAGTCTGCCGTCATCTGATAGGAAGAAGGGGAGGAAAGGTAGACGACACAAGGTTTCAATCAAACCAGTAGATGGAAATCAGCCTTCACCATCTGATAAGGATAACGTAGCCTTTGACAACCAATTGACTGAACAAGTTAGATATCATGGCAATCCCCTGCAAGATAGTGTTAATCCACTTCTTGAAGATAATAGTACAAAGACTTCGAGACAACATGTGGAGGATGAAGAGGAAAGATTTCAAGCTGATCTTAAGAAGGCTGTACGCCAGAGCCTTGATGCATTTCAAGAACAGCAGAAATTACCCTTGATTATGAGTTCCAGGACACCATTGATCAGTCATGGTGAAGTAGATAGTAATGGTCTTCCATCAAATGAACGCAATGTAGAAAATGTGCAGGCAGCTGGTATGTTTGGTACAGGACTTAAGAATGAAGTTGGTGAATATAATTGCTTTTTGAATGTGATTATTCAGTCATTATGGCATTTAAGACGGTTTCGAGAAGAGTTCCTGAGAAGATCTATGACTGAGCATGTTCATGTTGGGGATCCCTGTGTTGTTTGTGCATTATATGAAATTTTTGCTGCCTTGAACAAGGCATCTGCAGATTCTAGAAGAGAAGCAGTCGCCCCCACTTCTTTGAGAGTAGCTCTGAGCAATCTTTGTCCTGATAGTAATTTCTTCCAAGAGGGTCAGATGAATGATGCCTCTGAAGTTTTGGCAGTCATATTTGATTGCCTACACCAGTCATTGACTGCTAGTTCGAGTGTTTCTGATACAGACACAATAGAAAGCAATTGCATAGGGTCTTGGGACTGTTCAAGTGACACTTGTTTGGTACATTCCATCTTTGGAATGGACATTTTTGAACGAATGAATTGCTACAGTTGTGGCCTGGAATCTAGACATCTGAAGTACACTTCCTTCTTTCACAATATAAATGCTAGTGCTCTTCGGACAACGAAGGTTATGTGTTCAGAAAGCTCCTTCGATGAACTTCTGAATGTTGTTGAAATGAATCATCAGCTAGTATGTGATCAGGATGTTGGTGGATGTGGAAAACTCAATTACATTCATCACTTCCTTTCCGCACCACCACATGTATTCACAACAGTCTTGGGCTGGCAGAAAACTTGTGAGAGTGCTGATGACATCACAGAGACATTAGCTGCTCTAAGTACTGAGATAGATATCAGTGTTCTTTATCGGGGTCTAGATCCAAAGAATGTCCATAATTTGGTATCAGTGGTTTGCTATTATGGTCAACACTATCATTGTTTTGCGTACAGTTGTGACAAGAAATGCTGGATAATGTATGATGATAGAACCGTTAAGGTAATTGGTGGCTGGGCTGATGTTCTTACCATGTGTGAAAAAGGACACTTGCAACCTCAGGTTCTTTTCTTTGAAGCTGTAAATTAG 4848 41.79 MGPKKKIIDPRSKQSPAARGVVVDVPSSANAADQNSIPEKASNHNQSRIEPVLLNGPDGLSYSTIKLECERALTALRRGNHTKALRLMKELSSRNENSVHSALIHRVQGTICVKVASIIDDLNTKQRHLKNAIESARKAVQLSPNSIEFSHFYANLLYEVANDAKEYEEVVQECERALGIENPIDPAKESLQDEKSQKIPTAEARITHVQTELRQLIQKSNIYSISSWMKNLGNGEEKFRLIPIRRVTEDPMEVRLVQARRTNEIKKATKTPEERRKEIEVRVAAARLLQQKCETPQIQNEEGKVDRSLDSSLGSGTRAGERRKHGNLRKQGSSAERRDLVHSFWNSMSIEAKKDLLKIKISNLKAHFSSSKDASANEVISEALSFYNANKTWKFWVCCRCDEKFVDSDSHMHHVVQEHMGNLLPKMQSILPQNVDDEWTKMILNCSWKALDVSAAAKMLTAETKCKDSELVVDIFPQHHSECDNYFKDAWGSSPEKHKYGDSLNECRLSEKITNNGSKTYHENQGSVASYSSSDSFPVSDDPERTKLLEKIHAVFELLIRHKYLAASHLNKVIQFAMDELQGLASGSHLLNQGLDQTPLCICFLGASQLRKILKFLQELSQSCGIGRYSDKSTGQIEDSMSDKQAVEVREKVVLSEDASLLLLNECLLSSDITHADVPVAAADHMLAATAKDVTSNGVLSGVDPFLSWIYAGPSSGEQLVSWEKTKEEKIQRRMEIFQMLEKEFYHLQSLCERKCEHLNYEEALQSVEDLCLEEGKKREALNEFIPKSYESVLRKRREELIEAENGVLFISSRFELDAVTNVLKEAETLNVNQFGYQETFASVSPQLGDLESGQDEERRAKDYLHEVDTCIEVAIQRQKEQLSIEISKIDARIMRNVTGMQQLELKLEPVSAHDYQSILLPLVNSYLRAHLEDLAEKDATKKSDAASEAFLAELALDSKKGIRGGTDNSRHAHEKPKEKKKSKEFRKVKDSKVVSGPEQDVHRGQAVDGDPFPVSSDGDAAEVDIAVFENVDALRLQEEELRRKIELEADERKLEETLEYQRRIENEAKQKHLAELQKKSAQTTPNNLAGLVPNVEGADKHFKPSVVDKLAENDLVSDLSRNGPAMRNALSGVSNVGVLENSLPSSDRKKGRKGRRHKVSIKPVDGNQPSPSDKDNVAFDNQLTEQVRYHGNPLQDSVNPLLEDNSTKTSRQHVEDEEERFQADLKKAVRQSLDAFQEQQKLPLIMSSRTPLISHGEVDSNGLPSNERNVENVQAAGMFGTGLKNEVGEYNCFLNVIIQSLWHLRRFREEFLRRSMTEHVHVGDPCVVCALYEIFAALNKASADSRREAVAPTSLRVALSNLCPDSNFFQEGQMNDASEVLAVIFDCLHQSLTASSSVSDTDTIESNCIGSWDCSSDTCLVHSIFGMDIFERMNCYSCGLESRHLKYTSFFHNINASALRTTKVMCSESSFDELLNVVEMNHQLVCDQDVGGCGKLNYIHHFLSAPPHVFTTVLGWQKTCESADDITETLAALSTEIDISVLYRGLDPKNVHNLVSVVCYYGQHYHCFAYSCDKKCWIMYDDRTVKVIGGWADVLTMCEKGHLQPQVLFFEAVN 1615
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 745081 753389 - Carg18169-RA Car11g00132 156085
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00132 1615 MobiDBLite consensus disorder prediction 297 335 - -
Car11g00132 1615 MobiDBLite consensus disorder prediction 1139 1178 - -
Car11g00132 1615 Coils Coil 1212 1232 - -
Car11g00132 1615 MobiDBLite consensus disorder prediction 962 1015 - -
Car11g00132 1615 MobiDBLite consensus disorder prediction 317 335 - -
Car11g00132 1615 ProSitePatterns Zinc finger C2H2 type domain signature. 398 419 IPR013087 -
Car11g00132 1615 Coils Coil 119 139 - -
Car11g00132 1615 Coils Coil 1032 1068 - -
Car11g00132 1615 MobiDBLite consensus disorder prediction 1 50 - -
Car11g00132 1615 Pfam Protein of unknown function (DUF629) 341 874 IPR006865 -
Car11g00132 1615 MobiDBLite consensus disorder prediction 964 998 - -
Car11g00132 1615 MobiDBLite consensus disorder prediction 28 50 - -
Car11g00132 1615 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 1282 1614 IPR028889 -
Car11g00132 1615 MobiDBLite consensus disorder prediction 1193 1215 - -
Car11g00132 1615 MobiDBLite consensus disorder prediction 518 538 - -
Car11g00132 1615 Pfam Protein of unknown function (DUF627) 71 181 IPR006866 -
Car11g00132 1615 MobiDBLite consensus disorder prediction 1193 1208 - -
Car11g00132 1615 Pfam Ubiquitin carboxyl-terminal hydrolase 1283 1591 IPR001394 GO:0004843|GO:0016579
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car10g00162 Car11g00132 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00132 Car-Chr11:745081 Car12g00769 Car-Chr12:7403975 9.27E-06 dispersed
Car10g00162 Car-Chr10:773351 Car11g00132 Car-Chr11:745081 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00132 - - mcha:111007268 2727.97