Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00139 ATGGAGGCTCAACCTTTGCCAACCACAGCTGATGCAGTTCAATCAGCTGGAGAAGATGAAGAACATGCTCCCAAACATAAGGTTCCTTTAATGGCTGAGTTGGAGAAGCCTTCCATGGAGCCCCTCTCACTCGCATCTGCCTCTTCAACTTGGAAGGAAGAGGATCATGAGCATGAACAAAGGCTAAAAATGGCGAAAGGTGAAATGAGGGAAGTGAAGGAAGAAAACCAGCGGCTAAAAAGGTGTTTAGATGAAATGATGAGGGATTACGAGAGCCTGAAAAGGCAATTCCATGATATGAGTACCATAAACAACGAGGCAGCTGAAGAAGTTGAGGACATGGTTTCACTGACATTGGGAAGATCCTCAAGCGACCAAAACAAGAACACTTGCCCTGAAACAAAGCCAGATCTTCAAAACATTCAAAGTCCGGCCGACAGTGAACAAGGCAAGGAGGAAGATGCCGGACAGACTTGGCCGCCGGGTAAAGTGTTGAAGGGGTTGGCTGCGCCGGCGGCCGGAGAAGATGAAGTTTCTCAGCAGAATCCTCCGAAGAAGACGAGGGTTTGTGTGCGGGCTCGGTGTGATACGCCAACGCTGAACGATGGGTGTCAATGGAGAAAATATGGGCAGAAGATTGCTAAAGGAAATCCTTGCCCTCGAGCTTACTATCGCTGCACCGGCGCACCCTCTTGCCCGGTTAGGAAGCAGGTGCAAAGGAGTGTTGATGATATTTCAATACTAATCACTACCTATGAAGGAACTCACAACCATCCTCTACCTGTGTCAGCCATGGCCATGGCTTCAACCACGTCGGCCGCCGCCTCAATGCTCCTCTCGGGTGCTTCCACCTCGACCTCTCGGCCGGGACTAAACCCTTCACCGATCGGGACAGCGTCTGCAAATCTCCATGGAATGAACATGTACACCAATTCAAAGCAATTCTACTTGTCAAACTCTTCAATGCTATCTTCTTCTCTAAACCATCCCACAATCACCTTAGACCTCACTTCAAATCCTCCCTCAGCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCCTCTCCTTTCCACAAAATCCCTTCAACTTATCCCCCAAAATATCCCTTCACCAGCCTTGATTTTGGGTCTTGGAATACTAATATCAACAAAAATGTATTAGGAATGTCATCAGATCTTGCTAAGCAATTCCCTCCCCATACTAACATCTACCAAGCTTGCCTTCAACAATTTGCCAAACCTTCAACTCCTCCGCCCCCGCCTCTACCGGACACGATAGCAGCGGCAACCAAGGCAATTACGTCCGACCCGAGTTTCCAATCAGCATTGGCGGCTGCCCTGAGCTCGATCATCGGCGGCGGAAACGGGGGCGAGGCGGTTCAGGCAATGAGTAGCTATGTCCAAGCAGCACAGGGACAAGGAAGTATGGGGTTTCAGGCAGCTCCATCGTTGACATACTCCACATCCAAGAGTCCTTCATCTCCTGGTGACAGTAGAGACGATGATACCAAGTGA 1515 49.31 MEAQPLPTTADAVQSAGEDEEHAPKHKVPLMAELEKPSMEPLSLASASSTWKEEDHEHEQRLKMAKGEMREVKEENQRLKRCLDEMMRDYESLKRQFHDMSTINNEAAEEVEDMVSLTLGRSSSDQNKNTCPETKPDLQNIQSPADSEQGKEEDAGQTWPPGKVLKGLAAPAAGEDEVSQQNPPKKTRVCVRARCDTPTLNDGCQWRKYGQKIAKGNPCPRAYYRCTGAPSCPVRKQVQRSVDDISILITTYEGTHNHPLPVSAMAMASTTSAAASMLLSGASTSTSRPGLNPSPIGTASANLHGMNMYTNSKQFYLSNSSMLSSSLNHPTITLDLTSNPPSASSSSSSSSSSSSPFHKIPSTYPPKYPFTSLDFGSWNTNINKNVLGMSSDLAKQFPPHTNIYQACLQQFAKPSTPPPPPLPDTIAAATKAITSDPSFQSALAAALSSIIGGGNGGEAVQAMSSYVQAAQGQGSMGFQAAPSLTYSTSKSPSSPGDSRDDDTK 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 785975 788854 + Carg18176-RA Car11g00139 156092
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00139 504 MobiDBLite consensus disorder prediction 15 33 - -
Car11g00139 504 Coils Coil 55 96 - -
Car11g00139 504 MobiDBLite consensus disorder prediction 479 504 - -
Car11g00139 504 MobiDBLite consensus disorder prediction 50 76 - -
Car11g00139 504 Pfam WRKY DNA -binding domain 201 259 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car11g00139 504 MobiDBLite consensus disorder prediction 120 146 - -
Car11g00139 504 ProSiteProfiles WRKY domain profile. 195 261 IPR003657 GO:0003700|GO:0006355|GO:0043565
Car11g00139 504 MobiDBLite consensus disorder prediction 334 358 - -
Car11g00139 504 MobiDBLite consensus disorder prediction 1 76 - -
Car11g00139 504 MobiDBLite consensus disorder prediction 479 494 - -
Car11g00139 504 MobiDBLite consensus disorder prediction 120 165 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Car11g00139 Car13g00772 CCT
Car11g00139 Car13g00772 ECH
Car10g00169 Car11g00139 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00139 Car-Chr11:785975 Car11g01502 Car-Chr11:12089406 2.83E-55 dispersed
Car10g00169 Car-Chr10:815310 Car11g00139 Car-Chr11:785975 1.89E-127 wgd
Car11g00139 Car-Chr11:785975 Car13g00772 Car-Chr13:8627371 5.28E-94 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4229 PF03106 WRKY 8.70E-24 CL0274 Car TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00139 - - cmax:111471155 893.649