Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00151 ATGGACCCTTTTCCTTTGTCATGCCATCTTTCCCCTCTCCATTTCAGGAACTGCAATTTTGGGTTTGAAGACAGCATTTTTGACGTTTTTCCATTGTTTGAGACATGCCCAAATGACTCCTTTTTGGTTGTAAAGGATATTGAACCCATTAACACCATTTTATCAGAAGATGGTGGAGAAAATGAAAAGAAGGGATTAGAGAGGAAAGAAGGGAGGGGCAAAAGGAAGTGGCGCGGAGAAAGGTGCAGCAGCCCATCAAAAGGTTTGTCAAGAAAGACAATATCTGAGTACTTCTGGATGCCCATAAGTCAGGCCGCTAAGGAATTGAATGTGGGGCTCACTCTGTTGAAGAAGAGGTGTAGAGAATTGGGCATAAGGAGATGGCCTCATAGGAAGCTGATGAGCCTCCAAACGCTAATCAGGAATGTGAAGGAGCTTGAGAAGGAAGATGGAGTGAAGCTAAGGCATGTATTGGAGATATTAGAGAATGAGAAGAAGTTAATGGAAGAGAGGCCAGATTTACAGTTGGAGGACAACACGAAGAGGCTTAGACAAGCCTGCTTCAAGGCCAACTACAAGAAAAAAAGGCTGTCCGGAACAAACAACTCCTCAGCCACCAGGGTTCATCAGGATGATGATGAAGAAGAAGAAGATGAAGAAATGAAGTATCTGTTGGCGGATTGCTCATTTTCATTCACTGGTGGCAGCCTGTTGCTGTACTAA 723 43.98 MDPFPLSCHLSPLHFRNCNFGFEDSIFDVFPLFETCPNDSFLVVKDIEPINTILSEDGGENEKKGLERKEGRGKRKWRGERCSSPSKGLSRKTISEYFWMPISQAAKELNVGLTLLKKRCRELGIRRWPHRKLMSLQTLIRNVKELEKEDGVKLRHVLEILENEKKLMEERPDLQLEDNTKRLRQACFKANYKKKRLSGTNNSSATRVHQDDDEEEEDEEMKYLLADCSFSFTGGSLLLY 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 850641 851519 + Carg18188-RA Car11g00151 156104

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00151 240 MobiDBLite consensus disorder prediction 56 88 - -
Car11g00151 240 ProSiteProfiles RWP-RK domain profile. 69 156 IPR003035 -
Car11g00151 240 MobiDBLite consensus disorder prediction 57 82 - -
Car11g00151 240 MobiDBLite consensus disorder prediction 197 216 - -
Car11g00151 240 Pfam RWP-RK domain 89 136 IPR003035 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00151 - - - cmax:111471365 417.927
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00182 Car11g00151 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car03g00579 Car-Chr3:5511680 Car11g00151 Car-Chr11:850641 4.23E-25 dispersed
Car11g00151 Car-Chr11:850641 Car18g01240 Car-Chr18:11849431 1.37E-32 dispersed
Car10g00181 Car-Chr10:882053 Car11g00151 Car-Chr11:850641 9.91E-86 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g557 . . . Bda15g00603 Bpe12g00547 . . . . . Cma10g00191 Cma11g00143 Car10g00182 Car11g00151 . . . Bhi02g00318 . . . . . . Cla06g01591 . . . . . . Cone2ag0843 . . . . . . . Blo13g00009 . . . . . . Bma08g00221 . Cmo10g00208 Cmo11g00166 . . . . . Cpe18g00794 . . . . . . . . . . . . . . Lsi06g01463 Csa01g00234 Chy02g02498 Cme02g01884
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Car11g00151 CST 74 199 AtRKD Transcription Factor Family AT1G18790 69.7 8.9e-39 157.9
Car10g00181 . 98 229 AtRKD Transcription Factor Family AT1G18790 64.9 2.0e-38 156.8
Car10g00181 . 111 280 AtRKD Transcription Factor Family AT1G74480 56.1 2.2e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002327 1 2 1 3 2 2 3 2 2 4 1 2 2 4 2 2 2 2 2 2 1 2 2 2 2 1 2 3 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4233 PF02042 RWP-RK 2.40E-20 No_clan Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00151 Car_Chr11 FPKM 21.799057 21.443054 32.354195 32.835091 28.255365 27.883673 27.731508 28.929865 30.597843 28.975328