Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00153 ATGGCCTCCGTCGCCCTCAAATCCTTCATTGGCCTCCGCCAATCTACGCCGGAGAAGCCCCATTTCGTCACCCAAACTAAGGCCAACCCGAACCCCAAATCTCTGCGCCGGTTTTATGTTGCTGCTGCCAAAACTAGCCCTAAAATCAACGGACGCAACCTCAGAGTCGCGGTGGTGGGTGGTGGACCTGCCGGAGGATCGGCCGCCGAAACTCTCGCCAAGGGAGGCGTGGAGACTTTTCTGTTTGAGAGGAAGCTTGACAACTGCAAGCCATGCGGTGGTGCGATACCCCTGTGTATGGTTGGCGAGTTCGATCTCCCGTTGGACCTGATTGATCGCCGTGTCACGAAGATGAAGATGATTTCTCCGTCGAACGTTGCAGTCGACATCGGCCAAACCCTAAAACCTCACGAGTACATTGGGATGGTTCGGCGTGAGGTTCTGGATGCGTATCTTCGCGATCGAGCTGCTGAGAATGGGGCTAATGTGATTAATGGCTTGGTCATGAAATTGGAGCTCCCGAAGGAACGAAATGCGCCGTATGTCCTTCATTACACTTCGTACGACGGGAAAAAAGGTGGCGTCGGAGAGAAGAAGACATTGGAGGTGGACGCCGTGATCGGTGCCGACGGAGCCAATTCTCGCGTCGCCAAGGCCATTGACGCCGGCGATTACGACTACGCCATCGCATTCCAGGAGAGAATCAAGATCCCCGACGACAAAATGGTGTACTACGAGAATCTTGCTGAGATGTACGTAGGTGACGACGTATCGCCGGATTTCTACGGTTGGGTGTTCCCGAAATGCGACCACGTGGCGGTCGGCACCGGCACAGTGACTCACAAAGCCGACATCAAGAAGTTTCAAATAGCCACACGAAACAGAGCGAAGGACAAGATCTTAGGCGGCAAGATCATCCGAGTTGAAGCACATCCAATCCCAGAACACCCTCGTCCACGGCGGCTGGCTGGGAGAGTGGCACTGGTGGGCGATGCAGCTGGGTATGTGACGAAATGCTCAGGGGAGGGCATATACTTCGCAGCAAAGAGCGGGCGAATGTGCGCGGAGGCCATCGTGGAGGGGTCGGAGAATGGGAAGAGAATGGTGGAGGAATCGGACATGAGGAAGTACTTGGAGAAGTGGGATAAAACTTACTGGCCGACGTACAAGGTTCTGGACGTGTTGCAGAAGGTGTTTTACAGGTCGAATCCGGCGAGGGAAGCTTTTGTGGAGATGTGCGCGGATGAGTATGTGCAGAAGATGACATTCGACAGCTACTTGTACAAGAAAGTGGTGCCTGGGAATCCATTGGAGGACTTGAAATTGGCTGTCAATACAATTGGAAGCCTGGTGAGAGCCAATGCTCTGAGGAGGGAGATGGACAAAGTTAGTCTATAA 1398 53.79 MASVALKSFIGLRQSTPEKPHFVTQTKANPNPKSLRRFYVAAAKTSPKINGRNLRVAVVGGGPAGGSAAETLAKGGVETFLFERKLDNCKPCGGAIPLCMVGEFDLPLDLIDRRVTKMKMISPSNVAVDIGQTLKPHEYIGMVRREVLDAYLRDRAAENGANVINGLVMKLELPKERNAPYVLHYTSYDGKKGGVGEKKTLEVDAVIGADGANSRVAKAIDAGDYDYAIAFQERIKIPDDKMVYYENLAEMYVGDDVSPDFYGWVFPKCDHVAVGTGTVTHKADIKKFQIATRNRAKDKILGGKIIRVEAHPIPEHPRPRRLAGRVALVGDAAGYVTKCSGEGIYFAAKSGRMCAEAIVEGSENGKRMVEESDMRKYLEKWDKTYWPTYKVLDVLQKVFYRSNPAREAFVEMCADEYVQKMTFDSYLYKKVVPGNPLEDLKLAVNTIGSLVRANALRREMDKVSL 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 855730 857299 - Carg18190-RA Car11g00153 156106

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00153 465 Pfam Pyridine nucleotide-disulphide oxidoreductase 55 221 IPR023753 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00153 K10960 chlP, bchP; geranylgeranyl diphosphate/geranylgeranyl-bacteriochlorophyllide a reductase [EC:1.3.1.83 1.3.1.111] - csv:101221755 891.338
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00184 Car11g00153 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car20g00008 Car-Chr20:37550 Car11g00153 Car-Chr11:855730 0 transposed
Car10g00184 Car-Chr10:888731 Car11g00153 Car-Chr11:855730 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g559 Blo04g00772 . . . . . . . . . Cma10g00194 . Car10g00184 Car11g00153 Sed08g0217 . Cpe04g01498 Bhi02g00313 Tan09g2119 Cmetu02g1781 . Hepe09g0116 . . . . . . . . . Cone2ag0842 . . . . . . . . . . Bda14g00854 . Bpe15g00600 . . . Cmo10g00209 Cmo11g00168 . . . . . Cpe18g00792 . . . . . . . . . . . . . . . Csa01g00237 Chy02g02495 Cme02g01881
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007596 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00153 Car_Chr11 FPKM 27.509895 25.835773 59.022186 53.107491 37.981297 39.247883 33.92778 62.240685 59.727573 53.305817