Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00166 ATGATGGAATGCAAAGAGATCAATTGCAACAAGGATTGTGGTGTTGGGGAAAGTAATAGGGGCGGTGGAGGAGCTGGATTTGTTGATAGGAGTAAGGTGAAGATTTTACTGTGCGACAATGACTCCAAGAGTTCACAAGAGGTTTTTACACTTCTTTTGCGATGTTCATATCAGGGTATGGCTTCATTTCATTGCTTTAGACATGTGAAGTTTGTTTTTACAGTCATTTCAGTACGATCAGCTAGACAGGTGATTAATGCCTTGAATGCTGAGGGACCAGATATAGATATCATTTTAACTGAAGTAGATTTACCTATGGCCAAAGGTATGAAAATGCTCAAATACGTCACGCGGGATAAAGAGCTGCGACGTATTCCTGTGATTATGATGTCAGCGCAAGATGAGGTATCTGTTGTTGTTAAGTGCTTGAGGCTCGGAGCAGCGGACTACCTCGTGAAGCCTTTACGAACAAATGAGCTACTAAACTTGTGGACTCACATATGGAGAAGACGGCGCATGCTTGGATTGACAGAGAAGCAAATTTTAAATTTCGACTTTGATTTGGCGACTTCGGATCTTAGTGACCGCAATACAAATAGCACTACTTTTCTCTCAGACGACACCGATGATAACACTCATAGGAGCATTAACCCAGAATTGGACATGCCCCGTCAGGAAGAATTGGACATGCCCCATCAGGAAGATATGTCTGCTGTTGCTGATGCCACTGCCATGGACCCTCCTGCGGCTGTTTCATTGCAATTTCAGCCTAACGTGCAATTTATCGATGAAAACCATAACGGCCCTAAAAAGTGTAAACTGAAAATCGGAAAAATCGGAGAGACCTCTGCCTTCTTTACATATTGCAAACCTAATGCATTGAAAAGCAACTTTCAAGCACCACCTGCTCAACAATTGAGAAGGGAAGAGAACCCTCTATCATCTGAAACTGATCAACTGGTATCTATTGACCATTGTGAAACTGGAAATGCCTGTACAAGTTATTCGCAAGGAGATGGCTGTCGGAGTAGTATTAGTGTTCCTGATTCTTGGTCCATGGAGATGTCTAGCAGTCCTCAAACGTTCCAATTTTCTCAACCAATGAGCCATGATGAAGAAAAGCCATCTCAGGTGGTTGAGCATCCAAGAGACGAGTCTCGACCCGACGCTGCTGGATTACTGACTCAAACAAAGTATCCCTTTTATCTGCCTGGAGGCACGAATCAAGTTTTAATACCGCCGTCTACGGACTTCTACCACTGCAAGAATCAACAAGATGGGCAAAATCATGTGACTGCAGCTGCAATGCCACAGTACAGTCATCTTCATCATTTCCCTCTTGCATCTGGGATGCCCCCATTTCCATATTATCCACTCAATATATGTTTGCAACCCAGTCAAATGCCTAGTTCTCATCCATGGCCGCCATCATTTGGAAACTCATCCTCCACTGAAGTGAAACTGAGTAAAGCTGATATAAGAGAGGCTGCTTTGATTAAATTTAGACAAAAGAGGAAAGAGCGATGCTTCGACAAGAAAATTAGGTACGAAAACCGTAAACAACTAGCTGAGAAGAGGCCTCGCGTGCGAGGACAATTTGTGAGGAATGGAGCAAATGTTGATCTCAACGGGCAACCTTCTTCAACTGGCAACGACAACGACGACGACGAAACGCTCTAA 1680 43.63 MMECKEINCNKDCGVGESNRGGGGAGFVDRSKVKILLCDNDSKSSQEVFTLLLRCSYQGMASFHCFRHVKFVFTVISVRSARQVINALNAEGPDIDIILTEVDLPMAKGMKMLKYVTRDKELRRIPVIMMSAQDEVSVVVKCLRLGAADYLVKPLRTNELLNLWTHIWRRRRMLGLTEKQILNFDFDLATSDLSDRNTNSTTFLSDDTDDNTHRSINPELDMPRQEELDMPHQEDMSAVADATAMDPPAAVSLQFQPNVQFIDENHNGPKKCKLKIGKIGETSAFFTYCKPNALKSNFQAPPAQQLRREENPLSSETDQLVSIDHCETGNACTSYSQGDGCRSSISVPDSWSMEMSSSPQTFQFSQPMSHDEEKPSQVVEHPRDESRPDAAGLLTQTKYPFYLPGGTNQVLIPPSTDFYHCKNQQDGQNHVTAAAMPQYSHLHHFPLASGMPPFPYYPLNICLQPSQMPSSHPWPPSFGNSSSTEVKLSKADIREAALIKFRQKRKERCFDKKIRYENRKQLAEKRPRVRGQFVRNGANVDLNGQPSSTGNDNDDDETL 559
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 909897 912834 + Carg18203-RA Car11g00166 156119

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00166 559 ProSiteProfiles Response regulatory domain profile. 34 168 IPR001789 GO:0000160
Car11g00166 559 MobiDBLite consensus disorder prediction 197 218 - -
Car11g00166 559 Pfam CCT motif 494 536 IPR010402 GO:0005515
Car11g00166 559 MobiDBLite consensus disorder prediction 538 553 - -
Car11g00166 559 MobiDBLite consensus disorder prediction 373 388 - -
Car11g00166 559 MobiDBLite consensus disorder prediction 350 372 - -
Car11g00166 559 MobiDBLite consensus disorder prediction 350 388 - -
Car11g00166 559 Pfam Response regulator receiver domain 74 162 IPR001789 GO:0000160
Car11g00166 559 MobiDBLite consensus disorder prediction 520 559 - -
Car11g00166 559 ProSiteProfiles CCT domain profile. 494 536 IPR010402 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00166 K12127 TOC1, APRR1; pseudo-response regulator 1 - tcc:18604747 607.831
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00166 Car-Chr11:909897 Car12g00620 Car-Chr12:4209855 2.90E-13 dispersed
Car19g00359 Car-Chr19:5475519 Car11g00166 Car-Chr11:909897 6.89E-11 dispersed
Car01g00740 Car-Chr1:4502637 Car11g00166 Car-Chr11:909897 0 wgd
Car11g00166 Car-Chr11:909897 Car13g00976 Car-Chr13:9736380 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g586 . . . . . . . . . . . . . Car11g00166 . . Cpe04g01485 . . . . . . . . . . . . . . . . . . Lsi02g00088 . Chy12g01526 Cme12g01975 . . . . . . . . Sed08g2087 . Cmo11g00182 . . . . . . Bhi08g01139 Tan05g2421 Cmetu12g2014 Lac10g0096 Hepe07g2494 . . Cla04g01184 . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003640 0 1 1 1 1 1 3 1 1 1 1 1 3 1 1 3 1 2 2 1 1 2 4 2 2 1 2 3 2 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4236 PF00072 Response_reg 2.30E-14 CL0304 Car TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00166 Car_Chr11 FPKM 5.076874 5.911312 3.865321 4.299497 13.651974 13.488447 12.913446 7.942754 8.201957 8.497411