Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00169 ATGATTTTTCCCTTCGAAATTCGTCTCCCACTGGCCCTCTCGCTGGAGAGAGAAAGAGAGAGAGATAGAGAGAGAAAACACGTAGTAGAATTTGGTCCGTGTGTGGACGAAGGATTCAGGGACGAACACGATGGTCATTGCAACTTGCTCTTAAAGTGCTTCTATCTTTTAGCTTCAATTTTCTTCTATCGTCTTGAATTTCGTCTCACAGAAGAGTTTCAATCCGTTTCTGCATTGGCTATGGCTGAGCCTTCGAACAGCTTGCCCGTGGATTCTCTCGGCGACATCGACGACTACATTTCGGCCAATGAAGGAGAGGGTTCATTAACATGGAACATGTTTAGTCATGTTTTTGAATTCGTACAAAATGGGAACCGAGCATTTAGAGATAATAACTTTGAAGAGGCAATCAAGTGTTACTCAAGAGCAAATAACATCAAACCAGGTGATCCGGTTATTCTCAACAACAGAAGTGCTGCTTATATCAGGATTAGTCGATTCCTCAAAGATAGACCACCATCTGCTTCTGAATATCGACCATTGAATGGGTTGGATCCTACAGTACTTGCTGAACTTGCACTAAAAGATGCTGAGAAGCTGATGGACCAATGCAGTAAATCAGTGAAACCATATATTCTGAAGGCTAATGCTCTCATTCTCCTAGAAAAATATGACATAGCAAAGGATATTATTCTATCCGGCCTTCAAATTGACCCTCTAAGCAATCCTCTTCAGGCTTCTCTTCAGAGATTGGAGAGGATAGCTGTGAGTCAGACAGGAAAGGGACGCCATGGGCTACCAGATCGTAGTGATGAATTTGATTGCACCCTTTGTTTTAAGCTTCTTTATGAACCCATCACAACTCCCTGTGGGCATTCTTTCTGCCGTTCTTGCTTATTTCAGTCGATGGATCGTGGTAATAAATGTCCGCTGTGCCGAACAGTTCTTTTTATCAGTTCAAGAACATGCGCAATCAGTGTTACGCTGAGCAACATTATACAGAAGAACTTTCCAGAGGAGTATGCTGAAAGGAAGTCAGAACATGATGGTTTGGCAAATTTTGGTATCGATATAATGCCTCTTTTTGTCATGGATGTTGTTATCCCATGTCAGAAATTCCCGCTTCACATATTTGAACCCCGCTACAGACTTATGGTCCGGAGGGTAATGGAAGGCAATCATCGTATGGGAATGGTTATTGTGGATTCTACAACAGGTTCTATTGCTGATTTTGCATGTGAAGTGGAAATTACCGAGTGTGAGCCTCTTGCGGACGGACGATTCTATCTAGAGATTGAAAGTCGTCGAAGATTTCGCATTATTCGATCTTGGGATCAAGATGGGTATCGAGTGGCAGAGATCGAATGGGTCAATGATGTAGCTCCCGCAGAAGGGACAAGAGAGCAAGCAGAAGAAATGACAAATAATGCAGCAGAGTACGCTCAGTCATGGATAAGGAAGGCAAAAGAAGCATCCAGACGAGATCATAGCAAACACGATAGACTTCTTAATGTGGAAGCAATGATGCCCTCATCACGAGATCCTGAACGGTTCAGCTTCTGGCTTGCTACCCTTTCAAATCGGAGGCCCCTGGAAAGATTGGAACTTCTACGAATGACAGATACAAGAGAGTCTCCACTTCCACCACTTCCGGCGGCCATGGGGGGAGAATTCTGTACCACTCCATTCCCCTCCTCCCTTTTCCTCCTCTCTCTATTCCTCTTCTTCTCTCTCTCCTCTGCTATTCATCCCTCTTTTGTTCCCTTTTCCCCTCGCGACAATTACTTGATCGACTGCGGCTCGCCGGAGCAAACCCATCTCGACGACGGCCGGATTTTCAAATCCGATCGCGAATCGACTTCTCTCCTTGCCACTGAAGAAGACGTCCAAACCTCAATCGATTCCATTCCCGTAAACGCCACTGTTTCGCCTCTGTCTTCTTGGGCATTGCCTCTCTTCCGCACCGCCAGAATCTTCCCCAGCGATTCCACTTACACTTTCTTCATTTCTCAGGCCGGCCGCCATTGGATTCGCCTCTATTTTTACCCTCTTCCTCACCCTAATTATAATCTCTCCGATTCCGTTTTCACTGTCACAACAGACAGTTTCGTCCTCCTCCACGATTTCTCAATCAAGGCCGACTCCAAAATCGTCTCCAAGGAGTATCTAATCAACATCACCACTGATCGATTCTCCCTTCAATTCAAACCAAAGAAGAATTCATCGGCGTTCATCAATGCCATTGAAATCGTCTCCGCCCCAGATCCTCTGTTTTCCGATTCCGCCACCTCTGTTTCTCCGGTAGGGTTTTTTAGCGGATTGTCGCATTTCGCTCTGGAAATCTGCTACCGTGTTAATGTCGGAGGGCCTCAGATTGTTCCTAGAAACGATACGTTGTCAAGAACGTGGGAAACAGATGATGCTTATAACAGATTCCCACAAGGTTCTAAGAACGTTTCTGTGGGTTTGAACTCGATTAAATACCCTGGAAACGACTTGACTCCATTGATTGCTCCATATTGGGTTTATGCAACGGCGGAGGATCTGCAAGATTCAAAAACAATGCAAGTAAGCTTTAATATGAGCTGGAGTTTTAATGTGGAGCAGAGCTATTCGTATTTGATCAGACTCCATTTCTGTGACATTGTGAGCTCCGTCCTCAACACTTTGTACTTCAATGTTTACATCAATGGGATGATGGGTATTGCAGATCTTGACCTCTCTCAGCTCACCGGCGATCTTTCAACTCCTTACTACAGAGACCTCGTCCTCAATGCCTCCTCCGTTGGTCCATCGAATCTGAATTCAGGCCTTCAAGATGCAATCCTTAATGGTGTAGAGATCATGAAGATGAGCAACGATGCACAGAGCTTGGATGGGTTGTTTTCAGTGGATGGAAAATACATGGGAGGCTCAAGATTTAGCACCATGAAGATTGCAGCTATTGTGGCTTTGGGAATGGGAGTGATGGCGGTTCTGTTTCTTGGAGTAATGTTCTTGAGATGGCAGAAAAGGCCTCAAGGATGGGAGAAGAGGAAGAGCTTCTCTTCATGGCTTCTCCCATTGCATTCAAATCAATCCACAAAAGCAGCTCCAGAAGATCAAGCGTTTTTGGGTCTCGCCGGAGCAAGACTGGGTTCTCAGGTGAATTTGGCGGAGTGGGCAATGCAGAATTACAGAAAAGGAAAGCTAGATAAGATAATCGATCCTGTTATTAGCAGCTCAATAGTACAGGGGTCGCTGAAGAAATTCGTGGAAGCAGCAGAGAAATGCTTGGGTGAGTATGGCGTGGACAGGCCGAGCATGGGAGATGTGCTGTGGAACTTAGAATATGCTTTGCAGCTGCAAGAGGCAGTGTCAGAGCTGGAGGACCCAGAGGAAGACAAGTGCGAAGGGCTGGCGGCTTTGGACAAAGGAAACGACGATGAACCCAAAGGAAAAGGCAGCGCTTCTGCGAGTAATGACGCTTCTGAAGTGTCAGTGAGTGCTCCTCTGTTTGCAGAGGTTCAAAATTTTCAGGGAAGATGA 3528 45.61 MIFPFEIRLPLALSLERERERDRERKHVVEFGPCVDEGFRDEHDGHCNLLLKCFYLLASIFFYRLEFRLTEEFQSVSALAMAEPSNSLPVDSLGDIDDYISANEGEGSLTWNMFSHVFEFVQNGNRAFRDNNFEEAIKCYSRANNIKPGDPVILNNRSAAYIRISRFLKDRPPSASEYRPLNGLDPTVLAELALKDAEKLMDQCSKSVKPYILKANALILLEKYDIAKDIILSGLQIDPLSNPLQASLQRLERIAVSQTGKGRHGLPDRSDEFDCTLCFKLLYEPITTPCGHSFCRSCLFQSMDRGNKCPLCRTVLFISSRTCAISVTLSNIIQKNFPEEYAERKSEHDGLANFGIDIMPLFVMDVVIPCQKFPLHIFEPRYRLMVRRVMEGNHRMGMVIVDSTTGSIADFACEVEITECEPLADGRFYLEIESRRRFRIIRSWDQDGYRVAEIEWVNDVAPAEGTREQAEEMTNNAAEYAQSWIRKAKEASRRDHSKHDRLLNVEAMMPSSRDPERFSFWLATLSNRRPLERLELLRMTDTRESPLPPLPAAMGGEFCTTPFPSSLFLLSLFLFFSLSSAIHPSFVPFSPRDNYLIDCGSPEQTHLDDGRIFKSDRESTSLLATEEDVQTSIDSIPVNATVSPLSSWALPLFRTARIFPSDSTYTFFISQAGRHWIRLYFYPLPHPNYNLSDSVFTVTTDSFVLLHDFSIKADSKIVSKEYLINITTDRFSLQFKPKKNSSAFINAIEIVSAPDPLFSDSATSVSPVGFFSGLSHFALEICYRVNVGGPQIVPRNDTLSRTWETDDAYNRFPQGSKNVSVGLNSIKYPGNDLTPLIAPYWVYATAEDLQDSKTMQVSFNMSWSFNVEQSYSYLIRLHFCDIVSSVLNTLYFNVYINGMMGIADLDLSQLTGDLSTPYYRDLVLNASSVGPSNLNSGLQDAILNGVEIMKMSNDAQSLDGLFSVDGKYMGGSRFSTMKIAAIVALGMGVMAVLFLGVMFLRWQKRPQGWEKRKSFSSWLLPLHSNQSTKAAPEDQAFLGLAGARLGSQVNLAEWAMQNYRKGKLDKIIDPVISSSIVQGSLKKFVEAAEKCLGEYGVDRPSMGDVLWNLEYALQLQEAVSELEDPEEDKCEGLAALDKGNDDEPKGKGSASASNDASEVSVSAPLFAEVQNFQGR 1175
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 921605 937261 + Carg18206-RA Car11g00169 156122

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00169 1175 Coils Coil 463 483 - -
Car11g00169 1175 ProSitePatterns Zinc finger RING-type signature. 290 299 IPR017907 -
Car11g00169 1175 ProSiteProfiles Zinc finger RING-type profile. 275 313 IPR001841 -
Car11g00169 1175 MobiDBLite consensus disorder prediction 1122 1159 - -
Car11g00169 1175 Pfam Malectin-like domain 597 951 IPR024788 -
Car11g00169 1175 ProSiteProfiles TPR repeat profile. 117 150 IPR019734 GO:0005515
Car11g00169 1175 MobiDBLite consensus disorder prediction 1129 1145 - -
Car11g00169 1175 Pfam ATP-dependent protease La (LON) substrate-binding domain 359 542 IPR003111 -
Car11g00169 1175 Pfam Zinc finger, C3HC4 type (RING finger) 275 312 - -
Car11g00169 1175 ProSiteProfiles Lon N-terminal domain profile. 356 555 IPR003111 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00169 - - - cpep:111793369 1819.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car01g01513 Car-Chr1:12802277 Car11g00169 Car-Chr11:921605 2.28E-15 dispersed
Car02g01429 Car-Chr2:9356407 Car11g00169 Car-Chr11:921605 2.84E-07 dispersed
Car08g00061 Car-Chr8:360543 Car11g00169 Car-Chr11:921605 1.32E-06 dispersed
Car09g00115 Car-Chr9:563517 Car11g00169 Car-Chr11:921605 2.79E-15 dispersed
Car11g00169 Car-Chr11:921605 Car17g00766 Car-Chr17:6777947 2.51E-24 dispersed
Car11g01333 Car-Chr11:10958139 Car11g00169 Car-Chr11:921605 5.69E-06 dispersed
Car14g00636 Car-Chr14:3545610 Car11g00169 Car-Chr11:921605 1.05E-16 dispersed
Car14g01705 Car-Chr14:13540030 Car11g00169 Car-Chr11:921605 3.07E-06 dispersed
Car19g00134 Car-Chr19:1176327 Car11g00169 Car-Chr11:921605 1.94E-06 dispersed
Car11g00169 Car-Chr11:921605 Car08g00532 Car-Chr8:3334465 7.83E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g591 . . . . . . . . . . . Cma11g00126 . Car11g00169 Sed08g1458 . Cpe04g01483 Bhi02g00296 Tan09g2092 Cmetu06g0079 . . . . Cla06g01573 . . . . . . Cone2ag0829 Cone16ag0186 Cone13ag0056 Cone19ag0059 . . . . . . . . . . . . . . Cmo11g00185 . . . . . . . . . . . . . . . . . . . . Lsi06g01447 Csa01g00256 Chy02g02479 Cme02g01864
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008465 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 1 4 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00169 Car_Chr11 FPKM 2.109562 2.082203 3.311928 3.412726 2.551945 2.033849 2.411252 1.71524 2.015954 2.469554