Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00174 ATGGAAGCTAATTTAGCAGCCAGACATGTTTGCAAGCTCTGCAACAAGAGCTTTGCTTGTGGCAGATCCTTGGGAGGTCATATGAGGTCTCATTTGACCAATAACTTAGCTGATAATAATGATGAGAAACATAGCAGAACAAGTCTTCAACTTGCAAATTACAGTGCAGGAAGCTTATCATACATGGAGGAGGACACAGATTTGGAAGGTGGAAATCTTGGTTATGGTCTCAGAAAGAACCCGAAAAAGACTCAGAAACTTAAGTTCTTAGGTGAAGAACCGTCACTCCTAGACAAGTTTTGCAGACAGTGTGGTAAAGGGTTTCAATCATGGAAGAGTCTTTTTGGCCACATGAAATGCCACTCTGAGAGAGCACTCGTTTCCAGTAGTCAAGAGCTGGAAGAACCAGATTCTTATATCACTGATGCCAAACAGAAGGTGGTCATGGACATCCAATCTGATAATGAAACAGAAGCTCCCAACAAGAGAAAGAGATCAACAAGGAGAAGAACAGCCCAAATGGGCACTGCTGCTAATTCAACTTCTCTCTCTTTTGCCACAAATTCTTCCTCTGTTTCAGAAATTGAGCAAGAACAAGAAGTTGCCATTTCCTTGATGTTACTTTCCATGGATGTGGGAAATTGGGTTGGTTTCAATTCCCCAGCTGAGTCCTCGGATAACAATTCAAAGTTTCTTGAAGCCCCATCTGTTGTTGAGAGCAAAACCTCCTCTGTGAAGCAGTCAGAGCACAGTTCTTCTGGGTTTATCAACAGAGGAAAAATGATGAAGAAGACTCAACCCGATCAAAGAGCCGGATCTAAAACTTTCCCCAAGAAAAATGACCAAAACCAAGCTAGATTCAGCTCTGATACGTTCTTGAAATCTCGAAAGAAGACACTAGCAGAGTTTTGGGATTCAAAAATCTGCAAGAAACCCAAAAAGAGAAGCAAATTTGAGTGTAATATTTGCTACAAGATCTTTCACTCATATCAAGCACTTGGTGGGCATAGAGCAAGCCACAAGAAAATAAAGGGCTGTTTCGTCGAGTCCCCCATGGAAGAGGAGGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTGGGCAGTGAGAGCAGCCTAGAAGTGGCCATTTCTGCAGACCCAACAGCCGAAAGCAAGCTTTGGAAAGGCCTCAACAATGGCGGTCGAAGCGAAGAAGAAGACGAAATGGGTTCTCAGATTCCAAAAAAGATCAACAAACACAAGTGCCCAATTTGCAAGAAATTGTTTGCATCAGGTCAAGCACTTGGTGGGCATAAAAGATCGCATTTGATCAATGGATCAGAGTCGTCCAAAAACAGAGAACCCATTGAAATTCCAAAGCAAGTCCCTGGAATTAGGGGGTTTTTGGACCTGAATCTTCCTCCTGAACCTGCTGAAAGAGAACCCAAGGACCACAACCTCGCATCATTAAACCCATGGTGGGTTGCACCCAATGAACACAAACATGAAGCTCTTGTGAACGTGGGATTTCATATCTAA 1527 42.83 MEANLAARHVCKLCNKSFACGRSLGGHMRSHLTNNLADNNDEKHSRTSLQLANYSAGSLSYMEEDTDLEGGNLGYGLRKNPKKTQKLKFLGEEPSLLDKFCRQCGKGFQSWKSLFGHMKCHSERALVSSSQELEEPDSYITDAKQKVVMDIQSDNETEAPNKRKRSTRRRTAQMGTAANSTSLSFATNSSSVSEIEQEQEVAISLMLLSMDVGNWVGFNSPAESSDNNSKFLEAPSVVESKTSSVKQSEHSSSGFINRGKMMKKTQPDQRAGSKTFPKKNDQNQARFSSDTFLKSRKKTLAEFWDSKICKKPKKRSKFECNICYKIFHSYQALGGHRASHKKIKGCFVESPMEEEEEEEEEEEEEEEELGSESSLEVAISADPTAESKLWKGLNNGGRSEEEDEMGSQIPKKINKHKCPICKKLFASGQALGGHKRSHLINGSESSKNREPIEIPKQVPGIRGFLDLNLPPEPAEREPKDHNLASLNPWWVAPNEHKHEALVNVGFHI 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1006907 1008433 - Carg09215-RA Car11g00174 156127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00174 508 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Car11g00174 508 MobiDBLite consensus disorder prediction 350 411 - -
Car11g00174 508 MobiDBLite consensus disorder prediction 238 289 - -
Car11g00174 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 416 438 IPR013087 -
Car11g00174 508 MobiDBLite consensus disorder prediction 238 259 - -
Car11g00174 508 Gene3D Classic Zinc Finger 2 125 - -
Car11g00174 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 9 36 IPR013087 -
Car11g00174 508 SUPERFAMILY beta-beta-alpha zinc fingers 9 121 IPR036236 -
Car11g00174 508 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 6 503 - -
Car11g00174 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 318 345 IPR013087 -
Car11g00174 508 MobiDBLite consensus disorder prediction 351 372 - -
Car11g00174 508 ProSitePatterns Zinc finger C2H2 type domain signature. 418 438 IPR013087 -
Car11g00174 508 MobiDBLite consensus disorder prediction 268 289 - -
Car11g00174 508 MobiDBLite consensus disorder prediction 171 188 - -
Car11g00174 508 Gene3D Classic Zinc Finger 315 438 - -
Car11g00174 508 ProSitePatterns Zinc finger C2H2 type domain signature. 320 340 IPR013087 -
Car11g00174 508 ProSitePatterns Zinc finger C2H2 type domain signature. 11 31 IPR013087 -
Car11g00174 508 Pfam C2H2-type zinc finger 8 32 - -
Car11g00174 508 Pfam C2H2-type zinc finger 416 439 - -
Car11g00174 508 Pfam C2H2-type zinc finger 318 342 - -
Car11g00174 508 Pfam C2H2-type zinc finger 101 122 - -
Car11g00174 508 MobiDBLite consensus disorder prediction 432 457 - -
Car11g00174 508 SMART c2h2final6 9 31 IPR013087 -
Car11g00174 508 SMART c2h2final6 416 438 IPR013087 -
Car11g00174 508 SMART c2h2final6 318 340 IPR013087 -
Car11g00174 508 SMART c2h2final6 99 121 IPR013087 -
Car11g00174 508 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Car11g00174 508 SUPERFAMILY beta-beta-alpha zinc fingers 318 438 IPR036236 -
Car11g00174 508 MobiDBLite consensus disorder prediction 150 188 - -
Car11g00174 508 PANTHER C2H2-TYPE ZINC FINGER PROTEIN 6 503 - -
Car11g00174 508 MobiDBLite consensus disorder prediction 395 411 - -
Car11g00174 508 Coils Coil 352 372 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00174 - - - mcha:111006797 751.51
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Car10g00207 Car11g00174 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00174 Car-Chr11:1006907 Car19g00610 Car-Chr19:7584838 4.87E-17 dispersed
Car01g00418 Car-Chr1:2403892 Car11g00174 Car-Chr11:1006907 8.25E-20 transposed
Car01g00758 Car-Chr1:4584003 Car11g00174 Car-Chr11:1006907 3.05E-18 wgd
Car10g00207 Car-Chr10:1001194 Car11g00174 Car-Chr11:1006907 0 wgd
Car11g00174 Car-Chr11:1006907 Car13g00922 Car-Chr13:9504396 2.36E-92 wgd
Car11g00174 Car-Chr11:1006907 Car18g01027 Car-Chr18:10635256 4.48E-33 wgd
Car11g00174 Car-Chr11:1006907 Car04g01731 Car-Chr4:9920694 1.62E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g613 . Blo16g00175 . . . . . . . . . . Car10g00207 Car11g00174 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bpe15g00587 . . . . . . . . . . Cpe18g00770 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002585 2 2 1 2 2 1 4 1 1 1 1 1 4 2 2 4 1 0 4 1 2 2 2 2 2 2 2 4 2 1 58
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
4237 PF13912 zf-C2H2_6 9.20E-11 CL0361 Car TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00174 Car_Chr11 FPKM 1.36618 1.086921 0.56081 0.3258 2.950963 1.835519 3.254948 1.704091 1.687291 1.43767