Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00178 ATGGGGGGAGAAAATGACATGAAAACGTGGATTTCTGATCAGTTAATGTCACTGCTTGCCAAACAAGCAGCATCACCTGCCGATGTAGTGAGCAAGTTGGTGGTGGATTTTGGCTTGCCATCTTCCAATGAAACATTGGCTTTTGCTGAAGGAATTTTCTCTAGAGTGCCACGCAAGAAATCAACTGGTCTAAATCTTTATCAGAAGCAAGAGAGAGAAGCTGCAATTTTAGCAAGAAATCAAAAAAAATATACACTACTCGATGCTGACGACGAAGAAGTTCTTGAAGATAAAGGAGGCAGTGGTGATCCCCGAGAAACAGAAAATCGCAAAAAACGCTTTAGAAAGAAAAACGAATATCAAGAAGATGAAGATGATGAGGAAGAAAGTGCTCTTGAAAGAGAAAATAGGCAGGTTAAAAGACGAACTTCCAGTTCTGAAGACGATGGCTCTGAGTCGGAGGAAGAGAGACAGCGTGATCAAAGAGAGAGGGAGCAGTTAGAGCGAAATATAAGAGAACGTGATGCTGCTGGAACCAAAAAGTTAACAGAACAGAAATTGAGCAGGAAGGAGGAAGAAGAGGCAATTCGGAGATCCAAAGCTTTGGAGAATGATGGAACTGATACTTTGAGGAAAGTTTCAAGACAGGAGTACTTAAAGAAAAGGGAGGAGAAGAAACTGGAAGAAATCAGGTATAAGAAAGAAATATATGAGCTTGTGAAGAAGCGGACAGACGAGGCTGATGAAATCAATGAGTACAGGATGCCTGAAGCTTATGATCAGGAAGGAGGTGTTAATCAGGATAAGAGGTTTGCAGTGGCAATGCAGCGGTATAGGGATTCAGGTGCTGCAGATAAAATGAACCCATTTGCAGAACAAGAGGCATGGGAGGACCACCAAATAGGGAAAGCATCAATGAAATTTGGTTCCAAAAATAAGAAGCAAGCCGATGATTATCAGTTTGTATTTGAGGATCAGATTGAGTTTATTAAGGCTTCAGTTATGGAAGGTGATGAGTTTGTTGATGAACATCAGATTGAATCACTTGAAAAGTCCAAGGCTAAGTCAGCTCTGGAGAAGCTGCAGGAAGAGAGAAAAACATTGCCAATTTATCCATATCGTGATCAGTTACTCCAAGCTGTAAATGATTATCAGGTTCTTGTAATTGTCGGTGAAACTGGTTCGGGAAAAACCACACAGATACCTCAATATCTTCATGAAGCTGGGTACACAAAGCGAGGAAAAGTTGGATGCACACAACCGCGTCGAGTTGCAGCTATGAGCATTGCTGCCCGAGTATCTCAAGAACTGGGTGTCAAGCTTGGCCATGAGGTTGGTTACTCAATACGTTTTGAGGATTGCACGTCAGATAAGACTATTTTGAAGTACATGACAGATGGGATGTTGTTACGAGAATTCCTTGGCGAACCTGACCTTGCAAGCTACAGTGTTATAATGGTGGACGAGGCTCATGAAAGAACATTATCAACTGATGTTCTGTTTGGGTTAGTGAAGGATATTGCAAGGTTTCGACCTGATTTGAAGTTGCTAATTTCAAGTGCAACACTTGATGCTGAGAAGTTCAGTGATTACTTTGATTCAGCTCCAATATTTAAAATTCCTGGTAGACGATATCCTGTAGAAATTAACTTCACAAAAGCTCCAGAAGCGGACTATTTAGATGCAGCAATTGTGACTGCGCTTCAGATTCATGTCACAAAGCCTCCAGGAGATATATTGGTGTTTCTCACTGGTCAAGAAGAGATTGAAGCAGCTGAGGAAATAATGAAACATAGAACTCGAGGACTAGGCACAAAAATTGCCGAACTCATTATCTGCCCCATATATGCCAACTTACCAACAGAGCTACAGGCTAAGATATTTGAACCCACACCCATAGGAGCAAGGAAAGTTGTCCTGGCAACTAATATAGCAGAGACATCATTAACGATTGATGGAATAAAATATGTTATTGATCCTGGCTTTTCAAAAATAAAATCCTATAATCCAAGGACTGGGATGGAGTCGTTGCAAGTGAGTCCCATTTCTAAAGCATCAGCAAACCAAAGAGCAGGTCGTTCTGGACGAACAGGCCCTGGAATGTGCTTTCGTTTGTATACTGCTTATAGTTATTATAATGAGATGGAAGACAATACAGTACCAGAAATTCAAAGAACGAACCTTGCTAATGTTGTGCTTACACTTAAGAGCCTTGGTATTCATGACTTGGTAAATTTTGATTTTATGGACCAACCTCCATCTGAAGCATTGCTAAAAGCTTTGGAACTGCTCTACGCACTTGGTGCTTTAAATAAACTGGGCGAACTGACTAAGATGGGCAGGCGGATGGCTGAGTTTCCTCTTGATCCCATGCTTTCCAAGATGATGGTTGCTTCTGAGAAGCACAAGTGTTCAGATGAGATTATTTCTATTGCAGCTATGCTTTCTATTGGAAATTCTATCTTTTATCGCCCGAAGGATAAACAAGTTCATGCTGACAATGCTCGAATGAATTTTCACACTGGGAATGTGGGGGATCACATTGCATTGCTGAAGGTCTACAACTCTTGGAGGGAAACAAATTACTCTACGCAATGGTGCTATGAGAACTACATCCAGGTTAGAAGTATGAAACGTGCTAGAGATATCAGAGATCAACTTGAAGGGCTATTAGAAAGGGTTGAAATCGAACTGACTTCAAATTTGAATGACTTGGATGCAATAAAGAAGACCATAATATCTGGTTTTTTCCCTCACTCTGCAAAGTTACAAAAGAATGGCTCGTACCGGACCATTAAGCATCCACAGACAGTTCATATACATCCAAGCTCAGGGTTGGCTCAGGTTCTTCCCAGATGGGCTGTGTACCATGAATTAGTATGTACCTCAAAGGAATACATGAGACAGGTAACGGAATTGAAGCCCGAATGGTTGGTTGAAATTGCTCCACATTTCTATCAGCTTAAAGATGTCGAAGATTTGAGTCAAAAGAAGATGCCTCGCGGACAAGGTCGACCTGCAGAGAACTAA 3030 41.32 MGGENDMKTWISDQLMSLLAKQAASPADVVSKLVVDFGLPSSNETLAFAEGIFSRVPRKKSTGLNLYQKQEREAAILARNQKKYTLLDADDEEVLEDKGGSGDPRETENRKKRFRKKNEYQEDEDDEEESALERENRQVKRRTSSSEDDGSESEEERQRDQREREQLERNIRERDAAGTKKLTEQKLSRKEEEEAIRRSKALENDGTDTLRKVSRQEYLKKREEKKLEEIRYKKEIYELVKKRTDEADEINEYRMPEAYDQEGGVNQDKRFAVAMQRYRDSGAADKMNPFAEQEAWEDHQIGKASMKFGSKNKKQADDYQFVFEDQIEFIKASVMEGDEFVDEHQIESLEKSKAKSALEKLQEERKTLPIYPYRDQLLQAVNDYQVLVIVGETGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSIAARVSQELGVKLGHEVGYSIRFEDCTSDKTILKYMTDGMLLREFLGEPDLASYSVIMVDEAHERTLSTDVLFGLVKDIARFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEINFTKAPEADYLDAAIVTALQIHVTKPPGDILVFLTGQEEIEAAEEIMKHRTRGLGTKIAELIICPIYANLPTELQAKIFEPTPIGARKVVLATNIAETSLTIDGIKYVIDPGFSKIKSYNPRTGMESLQVSPISKASANQRAGRSGRTGPGMCFRLYTAYSYYNEMEDNTVPEIQRTNLANVVLTLKSLGIHDLVNFDFMDQPPSEALLKALELLYALGALNKLGELTKMGRRMAEFPLDPMLSKMMVASEKHKCSDEIISIAAMLSIGNSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYNSWRETNYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIELTSNLNDLDAIKKTIISGFFPHSAKLQKNGSYRTIKHPQTVHIHPSSGLAQVLPRWAVYHELVCTSKEYMRQVTELKPEWLVEIAPHFYQLKDVEDLSQKKMPRGQGRPAEN 1009
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1022365 1034382 + Carg09211-RA Car11g00178 156131

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00178 1009 MobiDBLite consensus disorder prediction 88 217 - -
Car11g00178 1009 MobiDBLite consensus disorder prediction 155 217 - -
Car11g00178 1009 MobiDBLite consensus disorder prediction 132 148 - -
Car11g00178 1009 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 908 984 IPR011709 -
Car11g00178 1009 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 378 541 IPR014001 -
Car11g00178 1009 Coils Coil 150 177 - -
Car11g00178 1009 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 483 492 IPR002464 -
Car11g00178 1009 Pfam Helicase conserved C-terminal domain 570 698 IPR001650 -
Car11g00178 1009 MobiDBLite consensus disorder prediction 98 121 - -
Car11g00178 1009 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 564 739 IPR001650 -
Car11g00178 1009 Pfam Helicase associated domain (HA2) 760 834 IPR007502 GO:0004386
Car11g00178 1009 Coils Coil 344 364 - -
Car11g00178 1009 Coils Coil 877 897 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00178 K12813 DHX16; pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13] - csv:101206270 1773.06
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car09g00798 Car-Chr9:4779963 Car11g00178 Car-Chr11:1022365 1.64E-143 dispersed
Car11g00178 Car-Chr11:1022365 Car17g01252 Car-Chr17:9481431 0 dispersed
Car18g00377 Car-Chr18:2317423 Car11g00178 Car-Chr11:1022365 1.47E-21 dispersed
Car11g00178 Car-Chr11:1022365 Car12g01069 Car-Chr12:10470864 0 transposed
Car11g00178 Car-Chr11:1022365 Car05g01105 Car-Chr5:10615438 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g625 . . Bda06g00528 . . . . Bma12g00972 . . . . . Car11g00178 . . Cpe04g01469 Bhi02g00257 . . . . . . . . . . . . . . . . . . . . . . Blo15g00330 . . Bpe07g00762 . . . . . Cmo11g00202 . . . . Cpe09g01050 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005975 1 6 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 3 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00178 Car_Chr11 FPKM 29.164673 35.218624 10.158663 9.408771 10.707647 9.067184 10.32528 25.038122 24.853802 26.121071