Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car11g00182 ATGGCGGCCCACTCCTCAACTTCCAATAACGACCGAGCTTTGAGAACTGCAACTTCTAATCAGTTCTTTGCATGGAGGGAATTTATATGGGGAGCTATTGCTGGAGCATTTGGAGAAGGAATGATGCACCCTATTGATACTATAAAGACTCGGATTCAAAGCCAGGCTATTCTATATGGAAGTCAAAATCAAAAGGGCCTGTTGCAGATGGTCCAATCAGTAAGGAAAATTGACGGATTTAGGGGCTTTTATAGGGGTATAGCTCCTGGAGTTACTGGCTCACTTGCCACTGGAGCTACATACTTTGGTGTCATTGAGTCCAGCAAGAAATGGATTGAAGAAACACATCCTAGCCTTGGCGGTCATTGGGCTCATTTCATTGCTGGAGCAGTTGGTAATCAATCCTTGATATCCCAAAAGATTTATCTCACTTTTGAGTCATGCCACCTCATGATCATTACTGTAGCCTTTTTGACGAAGTTCAATGTTGATGAATTCACCAAAGAAATAATTATGTGTGTATTTGCGCTTCTTGTTTCATTCTACACTAGCACAAGGTCATCTTGGAGCTCCCTTCCCATGAAGGATAATATCTCTGTGAAGCATGGTGGGCAAATGTATGGCTATTATTCAGGGATGTTCCAGGCTGGTCGTTCAATCTTGAAGCAACAAGGACTAAGAGGATTGTATGCAGGATATTGGTCTACACTTGCCAGGGATGTGCCGTTTGCTGGTCTAATGGTCATGTTTTATGAGGCGCTAAAAGATTTGACCGAGCATGGGAAGCAAAGATGGATGCCTAATTCAGATGTTAATAGCTCCTTGGAAGGACTTGCGTTGGGGGGATTAGCTGGTGGTCTCAGTGCTTATCTGACCACTCCCTTGGATGTGATCAAAACAAGAATGCAAGTTCAGGGATCAACTTTCAGGTATAACAGCTGGTTAGATGCAGTGAGAAGTATATGGGGGAGTGAAGGAACAAAGGGGATGTTTAGGGGTAGCATACCCAGAATCACATGGTATATTCCAGCCTCTGCTCTAACTTTTATGGCTGTGGAATTTCTGAGAGACCATTTCAATGAAAGATTGGACGATGAATCCAAAAAAGAAGCTACTACCTTATCAGCTGACAGAAAAGGAACTTTGGGAGAAGTAGCATAA 1161 43.07 MAAHSSTSNNDRALRTATSNQFFAWREFIWGAIAGAFGEGMMHPIDTIKTRIQSQAILYGSQNQKGLLQMVQSVRKIDGFRGFYRGIAPGVTGSLATGATYFGVIESSKKWIEETHPSLGGHWAHFIAGAVGNQSLISQKIYLTFESCHLMIITVAFLTKFNVDEFTKEIIMCVFALLVSFYTSTRSSWSSLPMKDNISVKHGGQMYGYYSGMFQAGRSILKQQGLRGLYAGYWSTLARDVPFAGLMVMFYEALKDLTEHGKQRWMPNSDVNSSLEGLALGGLAGGLSAYLTTPLDVIKTRMQVQGSTFRYNSWLDAVRSIWGSEGTKGMFRGSIPRITWYIPASALTFMAVEFLRDHFNERLDDESKKEATTLSADRKGTLGEVA 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 1050577 1054333 - Carg09207-RA Car11g00182 156135

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Car11g00182 386 ProSiteProfiles Solute carrier (Solcar) repeat profile. 272 358 IPR018108 -
Car11g00182 386 Pfam Mitochondrial carrier protein 23 113 IPR018108 -
Car11g00182 386 Pfam Mitochondrial carrier protein 275 361 IPR018108 -
Car11g00182 386 Pfam Mitochondrial carrier protein 205 258 IPR018108 -
Car11g00182 386 ProSiteProfiles Solute carrier (Solcar) repeat profile. 22 111 IPR018108 -
Car11g00182 386 ProSiteProfiles Solute carrier (Solcar) repeat profile. 168 257 IPR018108 -
Car11g00182 386 MobiDBLite consensus disorder prediction 366 386 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car11g00182 - - - csv:101208060 592.038
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Car11g00182 Car-Chr11:1050577 Car02g01217 Car-Chr2:8256739 1.40E-06 dispersed
Car11g00182 Car-Chr11:1050577 Car10g00284 Car-Chr10:1364049 5.94E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g653 . . Bda06g00525 . . . . Bma12g00968 . . . . . Car11g00182 . . Cpe04g01464 Bhi02g00689 . . . . . . Cla06g01542 Cam06g1702 Cec06g1764 Cco06g1763 Clacu06g1669 Cmu06g1615 Cre06g2428 . . . . . . . . . Blo15g00333 . . Bpe07g00758 . . . . . Cmo11g00207 . . . . . Cpe18g00704 . . . . . . . . . . . . . . Lsi06g01417 Csa01g00290 Chy02g02445 Cme02g01833
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009832 1 2 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 0 2 1 1 1 0 1 1 1 1 5 0 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Car11g00182 Car_Chr11 FPKM 3.573731 3.830186 2.60406 2.558315 6.802227 5.839791 6.742674 1.282515 1.015319 1.168182